PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539694.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 392aa    MW: 42600.1 Da    PI: 4.3842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539694.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1887137155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  KN539694.1_FGP008  87 CDFRGVRQRT-WGKWVAEIREP---N-RqSRLWLGTFPTAEAAACAYDEAARAMYG 137
                        689****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1287137IPR001471AP2/ERF domain
CDDcd000182.33E-1787144No hitNo description
PROSITE profilePS5103221.44388145IPR001471AP2/ERF domain
SMARTSM003804.0E-3488151IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2089145IPR016177DNA-binding domain
PRINTSPR003672.4E-989100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3089145IPR001471AP2/ERF domain
PRINTSPR003672.4E-9111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MTVDQRTTAT AIMPPVEMPP VQPGRKKRPR RSRDGPTSVS ETIKRWAELN NQQELDPQGP  60
KKSRKAPAKG SKKGCMKGKG GPENTRCDFR GVRQRTWGKW VAEIREPNRQ SRLWLGTFPT  120
AEAAACAYDE AARAMYGPMA RTNFGQHHAP AASVQVAQAA VKCALPGGGL TASKSRTSTQ  180
GAPADVQDVL TSGLSACEST TTTINNQSDV VSTLHKPEEV SEISSPLRAP PAVLEDGSNE  240
DKAESVTYDE NIVSQQRAPP EAEASNGRGE EVFEPLEPIA SLPEDQGDYC FDIDEMLRMM  300
EADPTNEGSW KGNKDGSDAI LELGQDEPFY YEGVDPGMLD NLLRSDEPAW LSADPAMFIS  360
GGFEDDSQFF EADPAMFISG GFEDDSQFFE GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1388144562ATERF1
3gcc_A2e-1388144562ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539694.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9158430.0JF915843.1 Oryza sativa dehydration responsive element binding protein 2B isoform a (DREB2B) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639655.10.0dehydration-responsive element-binding protein 2B isoform X6
SwissprotQ5W6R40.0DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0E0DQ870.0A0A0E0DQ87_9ORYZ; Uncharacterized protein
STRINGOGLUM05G13290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-33DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]