PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539694.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 651aa    MW: 72516.8 Da    PI: 5.5818
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539694.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26066.18e-21653148
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48
                       +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv+k+l+ 
  KN539694.1_FGP007  6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQG 53
                       7********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.4345111IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-20653IPR004883Lateral organ boundaries, LOB
CDDcd065473.01E-12337345No hitNo description
PfamPF036447.0E-9249322IPR005201Glycoside hydrolase, family 85
Gene3DG3DSA:3.20.20.801.8E-687243IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.57E-587261IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-6342358IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006491Biological ProcessN-glycan processing
GO:0006517Biological Processprotein deglycosylation
GO:0005737Cellular Componentcytoplasm
GO:0033925Molecular Functionmannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MGGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LQGGHDPGAY  60
ALWHWHLIDV FVYFSHYLVT LPPPCWVNAA HLHGVKVLGT FITEWEKGAE ICEEMLATEA  120
SAQMYAERLT ELAAYLGFDG WLINIEVKLD IQFIDNLKEF INHLTKTMHA AVPGSLVIWY  180
DAITIKGALD WQNKLNEYNK PFFDLCDGLF SNYTWKAKYP QESAVVAGER KYDVYMGIDV  240
YGRNTFGGGQ WNTNVALDLL KKDDVSAAIF APGWVYETKQ PPNFRTAQNR WWGLVQESWG  300
VLQSYPKQLP FYSDFDQGHG YQVSIEGVKV YGAPWDNISC QSFQPMLKYA GDRGLQTVIN  360
FEDEPYSGGN CVTVKGSLQQ NEIFSEQLFN GGLSMEGESV YVFYSVKADE RSGLGLSLDL  420
SSGNNESSSV LIADDTAAFT RKKQHRKYGS YVKADKAEPH TPVHQNWVVY KATIQPSAGF  480
TLTGINIVCT MKTTSGTDPE TDGDGSSEAG ANRSLHYHAS LGHVSIRNTE ETEFPPARSW  540
VTEGEYISWS NGSDESKLAS LKISWELENK QQAPFMKYNV YVEKLTADSN AKAPRIFLGV  600
ASVQAFYVSD LVVPSEVTAL KFFIQPCGRD GSCQGLDECP KFHLVPVDSA M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fha_A1e-316441983465Endo-beta-N-acetylglucosaminidase
3fha_B1e-316441983465Endo-beta-N-acetylglucosaminidase
3fha_C1e-316441983465Endo-beta-N-acetylglucosaminidase
3fha_D1e-316441983465Endo-beta-N-acetylglucosaminidase
3fhq_A1e-316441983465Endo-beta-N-acetylglucosaminidase
3fhq_B1e-316441983465Endo-beta-N-acetylglucosaminidase
3fhq_D1e-316441983465Endo-beta-N-acetylglucosaminidase
3fhq_F1e-316441983465Endo-beta-N-acetylglucosaminidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539694.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120670.0AK112067.1 Oryza sativa Japonica Group cDNA clone:001-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640507.10.0cytosolic endo-beta-N-acetylglucosaminidase 1 isoform X2
TrEMBLA0A0E0PL260.0A0A0E0PL26_ORYRU; Uncharacterized protein
STRINGORUFI05G13590.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-28LBD family protein