PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539688.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 187aa    MW: 20906.1 Da    PI: 7.46
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539688.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.9e-1158822147
                       TT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47
                       +g W++Ia++++ gRt++++k++w+++
  KN539688.1_FGP007 58 KG-WSKIASHLP-GRTDNEIKNHWNTH 82
                       67.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-8543IPR009057Homeodomain-like
PROSITE profilePS5129416.366987IPR017930Myb domain
SuperFamilySSF466895.62E-121179IPR009057Homeodomain-like
SMARTSM007174.9E-131385IPR001005SANT/Myb domain
PfamPF002491.6E-51443IPR001005SANT/Myb domain
CDDcd001673.38E-91683No hitNo description
Gene3DG3DSA:1.10.10.608.0E-155394IPR009057Homeodomain-like
PfamPF002491.2E-85782IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLITFLL TNGQCCWRAV PKLAVIEAES YIVSLSEKGW  60
SKIASHLPGR TDNEIKNHWN THIKKKLKKM GIDPLTHKPL PTPPPPPSPE KKHAERKNAA  120
VALDELIAAA APPSLLWDDD YRLPLPPPPP SPPAMYEELD ALQCYDQQRS AFEQEAAASA  180
WNKLELF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539688.1_FGP007
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3110511e-99AJ311051.1 Oryza sativa mRNA for Myb51 protein (myb51 gene).
GenBankAP0038981e-99AP003898.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1663_D06.
GenBankAP0057341e-99AP005734.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0032E15.
GenBankAP0149641e-99AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-99CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648743.12e-53transcription factor MYB20
SwissprotQ9C7U78e-50MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0E0LUS91e-52A0A0E0LUS9_ORYPU; Uncharacterized protein
STRINGOPUNC08G12780.12e-53(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.17e-46myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]