PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539685.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 855aa    MW: 95421.8 Da    PI: 7.2941
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539685.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-146.57.1e-156410675117
               CG-1  75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                        +g+ e +++yYa++e++p+f rrcywlL+++le+ivlvhy+++
  KN539685.1_FGP007  64 IGNEERVHVYYARGEDDPNFFRRCYWLLDKDLERIVLVHYRQT 106
                        68999***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143722.8671112IPR005559CG-1 DNA-binding domain
SMARTSM010766.8E-1329107IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-1164105IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.64E-10303389IPR014756Immunoglobulin E-set
SuperFamilySSF484032.8E-17478602IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-17488602IPR020683Ankyrin repeat-containing domain
CDDcd002043.60E-15488596No hitNo description
PROSITE profilePS5029717.953504608IPR020683Ankyrin repeat-containing domain
PfamPF127968.1E-8510600IPR020683Ankyrin repeat-containing domain
SMARTSM002489.6E-6537566IPR002110Ankyrin repeat
PROSITE profilePS5008811.835537569IPR002110Ankyrin repeat
SMARTSM00248580576605IPR002110Ankyrin repeat
SuperFamilySSF525407.7E-9653754IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.54688714IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5703725IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785704731IPR000048IQ motif, EF-hand binding site
PfamPF006120.002706724IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016726748IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274727751IPR000048IQ motif, EF-hand binding site
PfamPF006120.0084729748IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084811839IPR000048IQ motif, EF-hand binding site
PfamPF006120.04812831IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAGAGGWDPL VGSEIHGFLT YADLNYEKLV AEAAARWFRP NEIYAILANH ARFKIHAQPV  60
DKPIGNEERV HVYYARGEDD PNFFRRCYWL LDKDLERIVL VHYRQTAEEN AMAPPNPEPE  120
VADVPTVNLI HYTSPLTSAD STSGHTELSL PEEINSHGGI SASSGGSFVS SQQINNGPKN  180
SGNIFNTSMA SNAIPALNVV SETYATNHGL NQVNANHFGA LKHQGDQTQS LLASDVDSQS  240
DQFIRSSVKS PMDGNTSIPN EVPARQNSLG LWKYLDDDSP GLGDNPSSVP QSFCPVTNER  300
LLEINEISPE WAYSTETTKV VVIGNFYEQY KHLAGSAMFG VFGDQCVAGD IVQTGVYRFM  360
VGPHTPGKVD FYLTLDGKTP ISEICSFTYH VMHGSSLEAR LPPSEDDYKR TNLQMQMRLA  420
RLLFATNKKK IAPKLLVEGT KVANLMSALP EKEWVDLWNI LSDPEGTYVP VTESLLELVL  480
RNRLQEWLVE MVMEGHKSTG RDDLGQGAIH LCSFLGYTWA IRLFSLSGFS LDFRDSSGWT  540
ALHWAAYHGR ERMVATLLSA GANPSLVTDP TPESPAGLTA ADLAARQGYD GLAAYLAEKG  600
LTAHFEAMSL SKDTEQSPSK TRLTKLQSEK FEHLSEQELC LKESLAAYRN AADAASNIQA  660
ALRERTLKLQ TKAIQLANPE IEASEIVAAM KIQHAFRNYN RKKAMRAAAR IQSHFRTWKM  720
RRNFINMRRQ VIRIQAAYRG HQVRRQYRKV IWSVGIVEKA ILRWRKKRKG LRGIASGMPV  780
VMTVDAEAEP ASTAEEDFFQ AGRQQAEDRF NRSVVRVQAL FRSYKAQQEY RRMKIAHEEA  840
KIEFSEGQLG AACRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539685.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654800.0AK065480.1 Oryza sativa Japonica Group cDNA clone:J013025F20, full insert sequence.
GenBankAK0709760.0AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0E0AJU10.0A0A0E0AJU1_9ORYZ; Uncharacterized protein
STRINGOS07T0490200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators