PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539680.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 873aa    MW: 97334.4 Da    PI: 6.5104
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539680.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.6e-2599200199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  KN539680.1_FGP001  99 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 186
                        99*****************************86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  KN539680.1_FGP001 187 WNDSNQLLLGIRRA 200
                        7878889****997 PP
2Auxin_resp120.51.3e-39225308183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  KN539680.1_FGP001 225 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWTNSHWRSVK 308
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4884228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-4291214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-2198199No hitNo description
SMARTSM010193.3E-2599201IPR003340B3 DNA binding domain
PROSITE profilePS5086313.09899201IPR003340B3 DNA binding domain
PfamPF023624.3E-2399200IPR003340B3 DNA binding domain
PfamPF065072.4E-34225308IPR010525Auxin response factor
PfamPF023091.3E-7737827IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-7739818No hitNo description
PROSITE profilePS5174524.082742826IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MRAPALSFRC LRSVVGWFIF LKATVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA  60
ETDEVYAQMT LQPLSPQELK DPFLPAELGT ASKQPTNYFC KTLTASDTST HGGFSVPRRA  120
AEKVFPPLDF TQQPPAQELM AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG  180
DSVLFIWNDS NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN  240
PRASPSEFVI PLAKYVKAVY HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWT  300
NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP TGLPSLYGGK  360
EDDLASSLMW LRDSQNTGFQ SLNFGGLGMS PWMQPRLDSS LLGLQPDMYQ TIAAAAALQN  420
TTKQVSPAML QFQQPQNIVG RSSLLSSQIL QQAQPQFQQT YHQNINGNSI QGHSQPEYLQ  480
QSLQHCQSFN EQKPQLQPQQ QQQESHQQQP QHQQMQQQKH LSNFQTVPNA LSVFSQLSST  540
PQSTPSTLQT VSPFAQQHNF PDTNISCLSP SNVSSMHDTL RSFPSEAASD LPGVPRITPV  600
PVSDPWSSKR VAVESTISSR PHDISSQIEN FDLTPSSIPQ NSTLAPLPGR ECLVDQDGSS  660
DPQNHFLFGV NIDSQSLLMQ DGIPSLHNDN SSSTIPYSTS NFLSPSQDDY PLSQTLTTPG  720
CLDESEYVPC SDNADQVKRP PATFVKVYKS GTVGRLLDIT RFSSYHELRS EVGRLFGLEG  780
QLEDPLRSGW QLVFVDREDD VLLVGDDPWQ EFVNSVSCIK ILSPQEVQQM GKPGIELFST  840
SARRLGNSCD NYMSRQESRS LSTGIASVGS VEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1392532984388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539680.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705690.0AK070569.1 Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625706.10.0auxin response factor 6
RefseqXP_025879024.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0E0CG340.0A0A0E0CG34_9ORYZ; Auxin response factor
STRINGORGLA02G0045800.10.0(Oryza glaberrima)
STRINGOBART02G04960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]