PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539678.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 27722.7 Da PI: 6.5342 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 120 | 146 | 1 | 27 |
XXXXCHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkae 27 e+elkrerrkq+NRe+ArrsR+RK+++ KN539678.1_FGP007 120 ERELKRERRKQSNRESARRSRLRKQER 146 89***********************98 PP | |||||||
2 | bZIP_1 | 29.1 | 2.1e-09 | 166 | 203 | 26 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +e+eeL +kv eL+a N++L+ el++lkk ++ +++e+ KN539678.1_FGP007 166 QECEELSQKVTELTAVNSTLRTELDKLKKDCEDMEAEN 203 89********************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-16 | 113 | 201 | No hit | No description |
SMART | SM00338 | 2.5E-15 | 120 | 205 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.0E-8 | 120 | 146 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.13E-14 | 125 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 127 | 142 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-6 | 166 | 203 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MANQGPTYRP TNGPLNASQF VQLPPSGDGG SEDSSERRDD ADEKGLSPAK WRKLGRPDIE 60 GETSQAAAMS EQHPVKAAPN LNIGMDIWSN STMAAMPSGQ AEVNAGTHLR RDKALSQMDE 120 RELKRERRKQ SNRESARRSR LRKQERPKSF CHPPNYPVIF YGLTNQECEE LSQKVTELTA 180 VNSTLRTELD KLKKDCEDME AENSQLMDEM AQSEGSSVIT TLSIKIDTSK DRHGSSSQLN 240 KRTNDDSKG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | RRSRLRK |
2 | 136 | 143 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539678.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102250 | 1e-121 | AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632128.1 | 1e-122 | DNA-binding protein EMBP-1 isoform X2 | ||||
Refseq | XP_015632129.1 | 1e-122 | DNA-binding protein EMBP-1 isoform X3 | ||||
Refseq | XP_025879814.1 | 1e-122 | DNA-binding protein EMBP-1 isoform X1 | ||||
Swissprot | P25032 | 2e-41 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A0D3FQH3 | 1e-148 | A0A0D3FQH3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G38300.1 | 1e-149 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 3e-26 | G-box binding factor 1 |