PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539588.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 433aa    MW: 48088.2 Da    PI: 9.0365
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539588.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.49.6e-14190280397
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        f+r w+ +Dei++L +l+d   + g  p++     f+e v++    ++++s++ eK+r+LK+++++ v         +++k+hd +  els 
  KN539588.1_FGP007 190 FRRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSC 276
                        899*****************999999998845556777777777789********************999.....789************** PP

             DUF573  94 kiWg 97 
                         iWg
  KN539588.1_FGP007 277 EIWG 280
                        ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-13190280IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNPKKRVTAP PSSDHGSREN LAAGSPSNEV PAPQGDDAAQ EDALPESPPK SKKNRKKKKK  60
ALRAGDSGKI AAPDDPAEPT RPQQDVGEVD GRLAESEQEV PPNAGKAKKK ASAQARKKPS  120
AKQHAAAQEE EDGDLMAEAE EEVAPRQGDE EDGKGPLPQR KSKRVAALSG SICPPDPKRA  180
KIVDAQKPGF RRKWNGNDEI MILEALVDQI RSGGNVPQEP GHPLFHELVQ RLEGRTFNHS  240
DVREKVRSLK RRYNDVVLSG LAITKDHDLQ LHELSCEIWG RSVAHAGDKQ RSLARDEQSS  300
LARDEQKSFA GDEEKSLARD EQSSLARDEQ KSFARDEEKS LARDEKSLAS DGQRSFDDMC  360
KQFPLLAKEI KVLMEGQPAI MELFPRLDGD QVVAIEKKLE NLRWIDMKRK KKMAVKMAKV  420
RKGLIYKLEE LRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159KKNRKKKKK
2105117KAKKKASAQARKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539588.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLA0A0D9Y9H00.0A0A0D9Y9H0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G20420.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-07DNA-binding storekeeper protein-related transcriptional regulator