PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539566.1_FGP004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 535aa    MW: 58487.6 Da    PI: 5.0187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539566.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.91.3e-1580119137
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkk 37 
                        ldDg +WrKYGqKe+++s++p++Y+rCt++    C+++++
  KN539566.1_FGP004  80 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQ 119
                        58***************************98777999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-1473119IPR003657WRKY domain
PROSITE profilePS5081114.07975119IPR003657WRKY domain
SuperFamilySSF1182902.09E-1378119IPR003657WRKY domain
SMARTSM007746.3E-1480138IPR003657WRKY domain
PfamPF031068.2E-1381123IPR003657WRKY domain
HamapMF_0046935.643164466IPR020936Uncharacterised protein family UPF0176
SuperFamilySSF528212.36E-26277356IPR001763Rhodanese-like domain
Gene3DG3DSA:3.40.250.106.1E-41287438IPR001763Rhodanese-like domain
CDDcd015185.98E-49294422No hitNo description
SMARTSM004502.1E-18297426IPR001763Rhodanese-like domain
PROSITE profilePS5020615.891307429IPR001763Rhodanese-like domain
SuperFamilySSF528212.36E-26385455IPR001763Rhodanese-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSPAPAPPYA QVMEDMEKGK ELAAQLQGLL RDSPEAGRIV DQILHTFSRA MRALDKAAVS  60
AAGGEGTQQS SGNTVVVKNL DDGQAWRKYG QKEIQNSKHP KAYFRCTHKY DQLCTAQRQP  120
LKVEGGVGSS DQEEVLSSLT PGSSAVRGGG GGAGPFGPDQ GDVTSSLHCS YDADAFAVAG  180
MEFFKDDEVV FDLDDIMGGI ILAPEGINGS ICGTPEAVEK VLNFIQSDDR LKGLRMIQSP  240
VTPEDEAIHH GHTSQSPVGA GEDAPFRWDH VRVKLKKEIV ALGDPSVMPI KTVGKYVKPK  300
DWNALISDPD TVVIDVRNMY EIRIGKFKRA VDPCTNSFRE FPSWVDDQFQ LAASDSQPCS  360
ENNDNTIGGQ SEGLNSSEPK ELPRVAMYCT GGIRCEKASS FLLSKGFKEV YHLEGGILKY  420
LEEVPKAESL WEGECFVFDK RVSVDHGLAQ GTHKLCYGCK KPVSDEDMES PEWEYGVSCP  480
YCFATKSEEE KERARARQRQ FETWGVIGGP DKGRSPKRLE ANHAAEEPKQ VSSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4f67_A2e-5019644845247UPF0176 protein lpg2838
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539566.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094720.0AK109472.1 Oryza sativa Japonica Group cDNA clone:001-128-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637829.10.0rhodanese-like domain-containing protein 7
SwissprotQ1JPN01e-177STR7_ARATH; Rhodanese-like domain-containing protein 7
TrEMBLA0A0E0L1070.0A0A0E0L107_ORYPU; Uncharacterized protein
STRINGOPUNC05G10030.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-16WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Bauer M,Papenbrock J
    Identification and characterization of single-domain thiosulfate sulfurtransferases from Arabidopsis thaliana.
    FEBS Lett., 2002. 532(3): p. 427-31
    [PMID:12482606]
  2. Tsakraklides G, et al.
    Sulfate reduction is increased in transgenic Arabidopsis thaliana expressing 5'-adenylylsulfate reductase from Pseudomonas aeruginosa.
    Plant J., 2002. 32(6): p. 879-89
    [PMID:12492831]
  3. Bartels A,Mock HP,Papenbrock J
    Differential expression of Arabidopsis sulfurtransferases under various growth conditions.
    Plant Physiol. Biochem., 2007 Mar-Apr. 45(3-4): p. 178-87
    [PMID:17408957]