PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539566.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 535aa MW: 58487.6 Da PI: 5.0187 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.9 | 1.3e-15 | 80 | 119 | 1 | 37 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkk 37 ldDg +WrKYGqKe+++s++p++Y+rCt++ C+++++ KN539566.1_FGP004 80 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQ 119 58***************************98777999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-14 | 73 | 119 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.079 | 75 | 119 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-13 | 78 | 119 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-14 | 80 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-13 | 81 | 123 | IPR003657 | WRKY domain |
Hamap | MF_00469 | 35.643 | 164 | 466 | IPR020936 | Uncharacterised protein family UPF0176 |
SuperFamily | SSF52821 | 2.36E-26 | 277 | 356 | IPR001763 | Rhodanese-like domain |
Gene3D | G3DSA:3.40.250.10 | 6.1E-41 | 287 | 438 | IPR001763 | Rhodanese-like domain |
CDD | cd01518 | 5.98E-49 | 294 | 422 | No hit | No description |
SMART | SM00450 | 2.1E-18 | 297 | 426 | IPR001763 | Rhodanese-like domain |
PROSITE profile | PS50206 | 15.891 | 307 | 429 | IPR001763 | Rhodanese-like domain |
SuperFamily | SSF52821 | 2.36E-26 | 385 | 455 | IPR001763 | Rhodanese-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MSPAPAPPYA QVMEDMEKGK ELAAQLQGLL RDSPEAGRIV DQILHTFSRA MRALDKAAVS 60 AAGGEGTQQS SGNTVVVKNL DDGQAWRKYG QKEIQNSKHP KAYFRCTHKY DQLCTAQRQP 120 LKVEGGVGSS DQEEVLSSLT PGSSAVRGGG GGAGPFGPDQ GDVTSSLHCS YDADAFAVAG 180 MEFFKDDEVV FDLDDIMGGI ILAPEGINGS ICGTPEAVEK VLNFIQSDDR LKGLRMIQSP 240 VTPEDEAIHH GHTSQSPVGA GEDAPFRWDH VRVKLKKEIV ALGDPSVMPI KTVGKYVKPK 300 DWNALISDPD TVVIDVRNMY EIRIGKFKRA VDPCTNSFRE FPSWVDDQFQ LAASDSQPCS 360 ENNDNTIGGQ SEGLNSSEPK ELPRVAMYCT GGIRCEKASS FLLSKGFKEV YHLEGGILKY 420 LEEVPKAESL WEGECFVFDK RVSVDHGLAQ GTHKLCYGCK KPVSDEDMES PEWEYGVSCP 480 YCFATKSEEE KERARARQRQ FETWGVIGGP DKGRSPKRLE ANHAAEEPKQ VSSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4f67_A | 2e-50 | 196 | 448 | 45 | 247 | UPF0176 protein lpg2838 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539566.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109472 | 0.0 | AK109472.1 Oryza sativa Japonica Group cDNA clone:001-128-E12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637829.1 | 0.0 | rhodanese-like domain-containing protein 7 | ||||
Swissprot | Q1JPN0 | 1e-177 | STR7_ARATH; Rhodanese-like domain-containing protein 7 | ||||
TrEMBL | A0A0E0L107 | 0.0 | A0A0E0L107_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G10030.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-16 | WRKY DNA-binding protein 70 |
Publications ? help Back to Top | |||
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