PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539566.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 415aa MW: 45653.2 Da PI: 5.5832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539566.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28	7.1e-09	125	163	51	90
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +r+etr++C+a++k+++ dg + v++++ eH+H+la KN539566.1_FGP003 125 DSFSRPETRCKCQACMKISLI-DGLYSVYHFVPEHSHNLA 163 556899*************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-5	125	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MVGEPSEATR RMGSPQGGGE GEVGEDDNKG GPVGGGWGDK RQQRGGAEGT TSILDDPSAP 60 TFGDLDESKD PSDGILDDTS APTFRNLDES KDPPDGLGRN QLEDFIEIIG TRGTDKRAEA 120 AGYGDSFSRP ETRCKCQACM KISLIDGLYS VYHFVPEHSH NLATKSQAHQ LRSQRKINEA 180 QVASVEVAKS VGISTKAAID LMAKQACGFE NLGFTRVDMK NKLVGDKRYE EVKCDFKATQ 240 STPKLKAELR ILRDVAEVYT PAVYKIFEEE VMQTLNCDIF YCGDVDAEKV YKIKMASKPK 300 GIKLKRKEIR GSARPIGGLE KSSQKRKKKK NEDSPAEVVE LQPVTEMQPQ PYATVLGNLE 360 VPNDQAFLHV SQYYAALDAS TSNPTRVSMT PENQGLHQQG RSIQQFDTDL YNLFN

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MVGEPSEATR RMGSPQGGGE GEVGEDDNKG GPVGGGWGDK RQQRGGAEGT TSILDDPSAP  60
TFGDLDESKD PSDGILDDTS APTFRNLDES KDPPDGLGRN QLEDFIEIIG TRGTDKRAEA  120
AGYGDSFSRP ETRCKCQACM KISLIDGLYS VYHFVPEHSH NLATKSQAHQ LRSQRKINEA  180
QVASVEVAKS VGISTKAAID LMAKQACGFE NLGFTRVDMK NKLVGDKRYE EVKCDFKATQ  240
STPKLKAELR ILRDVAEVYT PAVYKIFEEE VMQTLNCDIF YCGDVDAEKV YKIKMASKPK  300
GIKLKRKEIR GSARPIGGLE KSSQKRKKKK NEDSPAEVVE LQPVTEMQPQ PYATVLGNLE  360
VPNDQAFLHV SQYYAALDAS TSNPTRVSMT PENQGLHQQG RSIQQFDTDL YNLFN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539566.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP001081	0.0	AP001081.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0693B08.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-09	FAR1-related sequence 5