PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539562.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 35482.8 Da PI: 5.6094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.8 | 5.2e-50 | 11 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deelv++yL++kv+++++ ++ +vd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v KN539562.1_FGP001 11 LPPGFRFCPSDEELVCFYLRNKVANHRVAS-GTLVDVDLHAREPWELPEVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRIV 101 79*************************888.88***************87788899**********************************99 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++++vg++ktLvfy grap+g+kt+Wvmhe+rle KN539562.1_FGP001 102 HEGtTRAVVGMRKTLVFYLGRAPNGQKTTWVMHEFRLE 139 99766778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-59 | 8 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 11 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-28 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAGLREMEST LPPGFRFCPS DEELVCFYLR NKVANHRVAS GTLVDVDLHA REPWELPEVA 60 KLTAEEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRI VHEGTTRAVV GMRKTLVFYL 120 GRAPNGQKTT WVMHEFRLET PNSQPKEDWV LCRVFDKKKP STMEAEGGGS SGSDLFIPGA 180 TDGSTGPSSP TTMAPLLGSS PDPTVVDRFD HRTTAVPPLM VLMQGGGDQM ISGSDGHGSS 240 NDNSSNALFN LTMLQYSFLE HRPPGDDMAV GAHFGTCQGG NNDATMALGM GFEEHGMGEI 300 IEMEPAWRQG GSNCVYRDEL YF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 10 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 8 | 158 | 17 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 10 | 158 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 10 | 158 | 16 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539562.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834701 | 0.0 | CT834701.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115P09, full insert sequence. | |||
GenBank | GQ229485 | 0.0 | GQ229485.1 Oryza sativa Japonica Group NAM-domain transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613250.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q84TE6 | 4e-59 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0EYX0 | 0.0 | A0A0E0EYX0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G09810.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-76 | NAC domain containing protein 74 |