PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539559.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 91aa MW: 10189.5 Da PI: 9.2896 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 125.8 | 6.2e-39 | 17 | 72 | 115 | 170 |
YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl KN539559.1_FGP011 17 DGDAPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 72 4568**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-37 | 10 | 72 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.53E-8 | 20 | 66 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 22 | 64 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MAACVAGERA EQQPVQDGDA PEKRQRVPSA YNRFIKDEIQ RIKAGNPDIS HREAFSAAAK 60 NWAHFPHIHF GLMSDHQGLK KTSLLPQVTN Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539559.1_FGP011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274015 | 1e-107 | AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464399.1 | 1e-42 | protein YABBY 3 | ||||
Refseq | XP_025876472.1 | 1e-42 | protein YABBY 3 isoform X2 | ||||
Swissprot | Q8L556 | 1e-43 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A0E0EZR2 | 3e-41 | A0A0E0EZR2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0M9I8 | 3e-41 | A0A0E0M9I8_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A287FEU6 | 7e-42 | A0A287FEU6_HORVV; Uncharacterized protein | ||||
TrEMBL | B9G6J8 | 1e-41 | B9G6J8_ORYSJ; Uncharacterized protein | ||||
TrEMBL | C5WWB5 | 3e-41 | C5WWB5_SORBI; Uncharacterized protein | ||||
STRING | OMERI10G11930.1 | 5e-42 | (Oryza meridionalis) | ||||
STRING | OPUNC10G13730.1 | 5e-42 | (Oryza punctata) | ||||
STRING | Sb01g017560.1 | 4e-42 | (Sorghum bicolor) | ||||
STRING | Traes_1DL_C5AF9D06A.1 | 4e-42 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-38 | YABBY family protein |
Publications ? help Back to Top | |||
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