PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539556.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1482aa    MW: 166546 Da    PI: 6.8722
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539556.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22135236199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  KN539556.1_FGP008 135 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 222
                        99***********************9*****86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  KN539556.1_FGP008 223 WNEKNQLLLGIRRA 236
                        8899999****997 PP
2zf-CCCH17.28.9e-06926948427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C +f + G C  GdrC F Hgp
  KN539556.1_FGP008 926 VPCYYFKK-GNCLKGDRCAFYHGP 948
                        689*9999.*************96 PP
3Auxin_resp60.95.1e-21261325159
         Auxin_resp   1 aahaastksvFevvYnPr.....astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59 
                        aahaa+t+s F+++YnPr     as+seFv++++k+ ka+  +++svGmRf+m fete+ss rr+
  KN539556.1_FGP008 261 AAHAAATNSRFTIFYNPRksvyrASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRT 325
                        79***************733333679************986599******************997 PP
4Auxin_resp24.79.8e-103533815583
         Auxin_resp  55 serrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         + r++Gt++ vsd+dpvrWp S Wrs+k
  KN539556.1_FGP008 353 TKHRYMGTITEVSDADPVRWPSSYWRSVK 381
                        6789**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-47120264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-41127250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-20134235No hitNo description
PROSITE profilePS5086312.224135237IPR003340B3 DNA binding domain
SMARTSM010191.4E-23135237IPR003340B3 DNA binding domain
PfamPF023621.7E-20135236IPR003340B3 DNA binding domain
PfamPF065073.7E-16261325IPR010525Auxin response factor
PfamPF065074.2E-6342381IPR010525Auxin response factor
PfamPF023093.4E-7748839IPR033389AUX/IAA domain
SuperFamilySSF542774.12E-7751830No hitNo description
PROSITE profilePS5174524.037755839IPR000270PB1 domain
PROSITE profilePS5010310.991872898IPR000571Zinc finger, CCCH-type
SMARTSM003560.45874897IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502922949IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5923948IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.1E-5923947IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4927949IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1482 aa     Download sequence    Send to blast
MSSSSAASIG PPQPPPPPVS PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ  60
VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE VYAQMTLQPL NPQEQNDAYL  120
PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI  180
HDIEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ  240
TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRKS VYRASPSEFV IPLSKYIKAV  300
FHTRISVGMR FRMLFETEES SVRRTSPHYL WEFYNWASIK THIILTRPMH TLTKHRYMGT  360
ITEVSDADPV RWPSSYWRSV KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH  420
PWYSGVASLH DDSNALMWLR GVAGEGGFQS LNFQSPGIGS WGQQRLHPSL LSSDHDQYQA  480
VVAAAAASQS GGYLKQQFLH LQQPMQSPQE QCNLNPLLQQ QILQQASQQQ IINPDAQNIQ  540
TMLSPSAIQQ QLQQLQQMQQ VQNDQKQKIQ PDQSYQVPTS AVLPSPTSLP SHLREKFGFS  600
DPNANSSSFI TSSSSDNMLD SSFLQGSSKA VDLSRFNQPV ASEQQQQQQA WKQKFMGSQS  660
VSFGGSVLHN SPTSKDGSVE NKIGRDVQNQ SLFSPQVDSS SLLYNMVPNL TSNVSDGNLS  720
TIPSGSTYLQ NAMYGCLDDS SGLLQNTGEN DPATRTFVKV YKSGSVGRSL DITRFSNYAE  780
LREELGQMFG IKGQLDDPDR SGWQLVFVDR ENDVLLLGDD PWESFVNSVW YIKILSPEDV  840
HKMGKQGNDP RGYMAFSSTG NECDFRHSDN ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG  900
MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY FKKGNCLKGD RCAFYHGPQS VGNNPSEQVA  960
KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI QHGAPITNER GKTAVDRSTV NSARTATVAI  1020
PVASNAMSCP KSEKVKNSTP AALKESFTTS SGEDHPECYQ NHFPMDSDPV RDWNQSYEMP  1080
PADDLPQNSR EADELLGESS PGFDVLVDND ADGAAYLHDE DFGGDMYPVE DYEYAPADFD  1140
VRAHHERERF NGMDEQDQMG HMYDGYERKR RRSSERSMER PFHSERRFLQ RDRDRVEMDG  1200
SDLRHRLRRR RINESSLAIS PERNGEQRRR DERYRERAHG HRSHRDHHQS SRGSTLSSRL  1260
QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR LSPVRRTEFQ GTRHRESGQH EEQTQRRSSE  1320
LALGSRNADG QHLTKDVPDS HNFPHRKNLR DSSKANGSVE PEASLDFEGP KPLSVILQRK  1380
REAAWANGTS ACSPKQDKSA EVSHRQASLA EAEKEGDNII SSDEYKSGSG DEEFRDEGHI  1440
PVEGHGQSSS HGGKLEAEDI IEFIVPKPLF IRLITDKYRS VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1462540248388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111671171RKRRR
211671172RKRRRS
312831290RRRLRDRL
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539556.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
GenBankHQ8588410.0HQ858841.1 Oryza sativa Japonica Group isolate UT1510 C3H-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636874.10.0auxin response factor 12 isoform X3
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLI1PQT00.0I1PQT0_ORYGL; Auxin response factor
STRINGORGLA04G0254900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6