PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539553.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 540aa MW: 57049.9 Da PI: 9.8291

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539553.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38.7	2.8e-12	162	251	7	98
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 w+ +De+ +L l +++g+ + ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg KN539553.1_FGP003 162 WTTDDEVKILEVLEAHFKSHGT--QLNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWG 250 *********99777777774..4699*******98865538*******************9965.567889********9 PP DUF573 98 s 98 + KN539553.1_FGP003 251 K 251 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.3E-18	162	250	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MAHATSAAGA LASWKETKKV AAPMGDRSVA GRESSRAILR KVGGGDGEGE EEEGGGAPES 60 EPEPEPVKKE SAKKTKAEAK KKRAAPEPAP SGKAKKAKPE KSSAAAAPEP APSSGKSKKA 120 AKAEAAKSAA AEPAPSTGKV SKSKLVPEPS PSSKSGKALS RWTTDDEVKI LEVLEAHFKS 180 HGTQLNVEGI IAAVGDSLER KSIKYSDMYE KVRRLKQRYE ATAKKVEHGG DLPAKEDDLR 240 MYQLSSEIWG KNAKDAGNLS KNKKGQAKKD KVSGDSKEAA KEDKVDEAAT AVNEKGGTLA 300 ENKKGKTNKQ KTGMETKVGS SKEAALAASP TKGKKKGSHK DKLDEEAKSG TAKVTSTIAT 360 DDDDDDDGTL GGSKREKAGK EELDGDTHIV MPKEATTTAA RDDGTLVGSK KGKADNGKLD 420 GDTHSVMPKE ATAGTQNGGI LTGGENHKEK VDKDANVPSI RREYAELQSL YPNLASFVNG 480 IEAQHPCGST FKRAFEFISD DKACTLESKI KKQKIAEVRM QLRLADTKKE VANALLGLLD

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MAHATSAAGA LASWKETKKV AAPMGDRSVA GRESSRAILR KVGGGDGEGE EEEGGGAPES  60
EPEPEPVKKE SAKKTKAEAK KKRAAPEPAP SGKAKKAKPE KSSAAAAPEP APSSGKSKKA  120
AKAEAAKSAA AEPAPSTGKV SKSKLVPEPS PSSKSGKALS RWTTDDEVKI LEVLEAHFKS  180
HGTQLNVEGI IAAVGDSLER KSIKYSDMYE KVRRLKQRYE ATAKKVEHGG DLPAKEDDLR  240
MYQLSSEIWG KNAKDAGNLS KNKKGQAKKD KVSGDSKEAA KEDKVDEAAT AVNEKGGTLA  300
ENKKGKTNKQ KTGMETKVGS SKEAALAASP TKGKKKGSHK DKLDEEAKSG TAKVTSTIAT  360
DDDDDDDGTL GGSKREKAGK EELDGDTHIV MPKEATTTAA RDDGTLVGSK KGKADNGKLD  420
GDTHSVMPKE ATAGTQNGGI LTGGENHKEK VDKDANVPSI RREYAELQSL YPNLASFVNG  480
IEAQHPCGST FKRAFEFISD DKACTLESKI KKQKIAEVRM QLRLADTKKE VANALLGLLD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539553.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004168	0.0	AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626761.1	0.0	neurofilament medium polypeptide
TrEMBL	A0A0E0ND82	0.0	A0A0E0ND82_ORYRU; Uncharacterized protein
STRING	ORUFI02G12830.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37