PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539511.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 329aa    MW: 36612.6 Da    PI: 7.4404
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539511.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.68.3e-33581581101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaC+ ++ +C+ +C la yf  +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P++Ga+gv+++l++++e++ a
  KN539511.1_FGP010  58 RCAACREQKTGCSLECLLASYFLGDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQSGATGVMWHLERKVERELA 149
                        6******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        +l++l+++l
  KN539511.1_FGP010 150 KLSKLRQKL 158
                        ****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.27757158IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-2958155IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDLEQELDCL KAGAVVVGHE AVAGGEVGGL AHLDDPSLAP KSSPSPPPPF PPQQQRPRCA  60
ACREQKTGCS LECLLASYFL GDEKVRLLNA QRLFGTRNIR RFVQATLPEK RDDLMSSIKY  120
EAQVWARNPQ SGATGVMWHL ERKVERELAK LSKLRQKLEM CKNLAAKKGI PEAKGVGVRQ  180
VTSKEQEQER QYQVCPERIS AWTPRLFVHR SACGIPISQT ESRIACMQFF GRAFMAFAGQ  240
VQEEVINNEA EDAHYDFFPL QAHLVLNSLC NPTHWEATID ALAQCARLDS LASTTPTTTE  300
CHRDGRAPPT YVKGEGDVDH TSSMSFHNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539511.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1NP831e-124I1NP83_ORYGL; Uncharacterized protein
STRINGORGLA01G0167300.11e-125(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1987288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-18LOB domain-containing protein 22