PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539510.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 333aa MW: 37812.5 Da PI: 6.3434

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539510.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.2e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeelv++yL+kkv+ kk++l +vik++d+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d KN539510.1_FGP009 7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDIDLYKIEPWDLQEqcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 97 69**************************.9***********952444442555***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k++++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle KN539510.1_FGP009 98 KPIYV-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136 *.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	7	156	IPR003441	NAC domain
Pfam	PF02365	2.7E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDAFSHVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDVIK DIDLYKIEPW DLQEQCKIGN 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYRGRA 120 PNGQKSDWIM HEYRLETNEY EAPQEEGWVV CRVFKKRVAT VQRAAGDGGD SPFWFNEHVA 180 FMAPAPGLDS PYHGHRQSHP CKLEVEYHHH HLLPQEAAPF MHLPRLESPK LPAADIIGAT 240 AASSSALQPC GHTTAQQLQL QIEPVYVTAD ASAADWRDLD KLVASQFGHG DSTAKEPSYC 300 NPVQVFQVEG KQEDSLDYVS TSASCGGEED LWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539510.1_FGP009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN634075	0.0	JN634075.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634595.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-116	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0E0D6M2	0.0	A0A0E0D6M2_9ORYZ; Uncharacterized protein
STRING	OGLUM04G19900.1	0.0	(Oryza glumipatula)
STRING	ORUFI04G21580.1	0.0	(Oryza rufipogon)
STRING	OBART04G20020.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	2e-96	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]