PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539506.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 471aa MW: 52036 Da PI: 9.703 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.5 | 5.1e-34 | 53 | 144 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+ye+++d+ ++++isw gnsfvv+d + fa Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkkel KN539506.1_FGP002 53 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVFLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKEL 135 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++ikr+++ KN539506.1_FGP002 136 LKTIKRRQH 144 *******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-36 | 49 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.01E-33 | 49 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-57 | 49 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-18 | 53 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.2E-30 | 53 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-18 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 92 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-18 | 104 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM01190 | 1.2E-34 | 265 | 463 | IPR009038 | GOLD domain |
PROSITE profile | PS50866 | 8.745 | 322 | 379 | IPR009038 | GOLD domain |
Pfam | PF01105 | 2.6E-34 | 332 | 462 | IPR009038 | GOLD domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MNPLRVIVKE EELDFAAAAA AAAGEVSPSS WAVGVMDLPR PMEGLGEAGP PPFLCKTYEV 60 VDDPGTDTVI SWGFAGNSFV VWDANAFAAV FLPRYFKHSN FSSFVRQLNT YGFRKVDPDR 120 WEFANEGFLR GKKELLKTIK RRQHISPQPQ VKGREGSTAK TKVSDILSPP CKLPKNSQAP 180 LAMEGSRSRE ASTSGEASRG VHATAAAGQQ LQRFSRSTMV VLYSCKSVET EATVAGPTAP 240 PATAITDSRD AKEDGRQLLG QATRERHYVV EAECVGTAWS VLMRSIGREA ESSKSRASRR 300 KEEDAEERIK AIARKAGNPS KIKLAQPPCE EGGGGNTVYT LKGKSGDKFE FKAPRGGMYK 360 FCFHNPYGAP ETVSFYIHVG HIPNEHNLAK DEHLDPINVK IAELKEALES VTAEQKYLKA 420 REARHRHTNE STRRRVMFYT IAEYLAFMGA SALQVVYIRR LFSKNVAYNR V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-27 | 34 | 142 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-27 | 34 | 142 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-27 | 34 | 142 | 10 | 129 | Heat shock factor protein 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | LKTIKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539506.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059983 | 0.0 | AK059983.1 Oryza sativa Japonica Group cDNA clone:006-212-F12, full insert sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-57 | heat shock transcription factor A2 |