PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539506.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 471aa    MW: 52036 Da    PI: 9.703
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539506.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.1e-34531442102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye+++d+ ++++isw   gnsfvv+d + fa   Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkkel
  KN539506.1_FGP002  53 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVFLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKEL 135
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+++
  KN539506.1_FGP002 136 LKTIKRRQH 144
                        *******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3649142IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-3349142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5749142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-185376IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3053142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-18104116IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM011901.2E-34265463IPR009038GOLD domain
PROSITE profilePS508668.745322379IPR009038GOLD domain
PfamPF011052.6E-34332462IPR009038GOLD domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005794Cellular ComponentGolgi apparatus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNPLRVIVKE EELDFAAAAA AAAGEVSPSS WAVGVMDLPR PMEGLGEAGP PPFLCKTYEV  60
VDDPGTDTVI SWGFAGNSFV VWDANAFAAV FLPRYFKHSN FSSFVRQLNT YGFRKVDPDR  120
WEFANEGFLR GKKELLKTIK RRQHISPQPQ VKGREGSTAK TKVSDILSPP CKLPKNSQAP  180
LAMEGSRSRE ASTSGEASRG VHATAAAGQQ LQRFSRSTMV VLYSCKSVET EATVAGPTAP  240
PATAITDSRD AKEDGRQLLG QATRERHYVV EAECVGTAWS VLMRSIGREA ESSKSRASRR  300
KEEDAEERIK AIARKAGNPS KIKLAQPPCE EGGGGNTVYT LKGKSGDKFE FKAPRGGMYK  360
FCFHNPYGAP ETVSFYIHVG HIPNEHNLAK DEHLDPINVK IAELKEALES VTAEQKYLKA  420
REARHRHTNE STRRRVMFYT IAEYLAFMGA SALQVVYIRR LFSKNVAYNR V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-273414210129Heat shock factor protein 1
5d5v_B3e-273414210129Heat shock factor protein 1
5d5v_D3e-273414210129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141LKTIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539506.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0599830.0AK059983.1 Oryza sativa Japonica Group cDNA clone:006-212-F12, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-57heat shock transcription factor A2