PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539504.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 933aa MW: 101791 Da PI: 6.0088

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539504.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.4e-29	562	613	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI+RWP+Rki+++ KN539504.1_FGP009 562 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKV 613 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	548	633	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-26	565	613	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.77E-22	823	910	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-21	829	910	No hit	No description
PROSITE profile	PS51745	23.964	832	912	IPR000270	PB1 domain
SMART	SM00666	6.5E-18	832	912	IPR000270	PB1 domain
Pfam	PF00564	8.0E-16	833	909	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR 60 MFAMWPSMGS SPCAAGMSED TPLDTYSGLG EAVEEPSQIM PVNPTEAEKT GKCSGELGSD 120 DGAHQGSSMV PRESLGSGAL AQVWMPVEQE GHVVLSTCEQ PFLLDQVLAG YREVSRHFVF 180 SAKEEPGLQP GLPGRVFISG VPEWTSSVLY YNRPEYLRME HALHHEIRGS LAMPIYDPSK 240 DSCCAVFELV TRKEKPDFSA EMDNAVNLKA TKGSSNQKVP SSLLSSERLY CDNFSCTPWK 300 NFYTENQKFA FTEILDVLRA ICHAHMLPLA LTWVPTSNGI DGGYVVGKDG ASFSQSGKTI 360 IRIHESACYV NDGKMQGFLQ ACARRHLEKG QGIAGRALKS NLPFFSPDIR EYSIEDYPLA 420 HHARKFSLHA AVAIRLRSTY TGNDDYILEF FLPVSCKGSG EQQMLLNNLS STMQRICKSL 480 RTVYEAEVDN VNAGTAAVFR KNNESCLPTG HTESSSHGDQ SITGASFEDT SLANKPGVME 540 PELAEQVQPS SIGHAEKKRS TAEKNISLDV LRKYFSGSLK DAAKSLGVCP TTLKRICRHH 600 GISRWPSRKI NKVNRSLKKI QTVINSVHGV DRSLQYDPAT GSLVPVVSLP EKLTFPSCDG 660 LPTPSVGKTV EENSDLKSEE GCSLPDGSQR QSCQLQISDV KKSNEDEFHI GSGNSDFYGA 720 NATAKSNSEV TQGPLCPTGA FSALHLKGTD CTNPSSSLRP SSESTRDQIV GRNSPSIQQE 780 DLDMLDSHEA KDKDHMHPST SGMTDSSSGS ASSHPTFKQN TRSALKDTAS PALTVKATYN 840 EDTVRFKFLP SMGWYHLLEE IAKRFKLPTG AFQLKYKDDE DEWVILANDS DLQECVDVLD 900 SIGSRNVKLQ QTEPHDSVAI RVYDAFAAKR HGG

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR  60
MFAMWPSMGS SPCAAGMSED TPLDTYSGLG EAVEEPSQIM PVNPTEAEKT GKCSGELGSD  120
DGAHQGSSMV PRESLGSGAL AQVWMPVEQE GHVVLSTCEQ PFLLDQVLAG YREVSRHFVF  180
SAKEEPGLQP GLPGRVFISG VPEWTSSVLY YNRPEYLRME HALHHEIRGS LAMPIYDPSK  240
DSCCAVFELV TRKEKPDFSA EMDNAVNLKA TKGSSNQKVP SSLLSSERLY CDNFSCTPWK  300
NFYTENQKFA FTEILDVLRA ICHAHMLPLA LTWVPTSNGI DGGYVVGKDG ASFSQSGKTI  360
IRIHESACYV NDGKMQGFLQ ACARRHLEKG QGIAGRALKS NLPFFSPDIR EYSIEDYPLA  420
HHARKFSLHA AVAIRLRSTY TGNDDYILEF FLPVSCKGSG EQQMLLNNLS STMQRICKSL  480
RTVYEAEVDN VNAGTAAVFR KNNESCLPTG HTESSSHGDQ SITGASFEDT SLANKPGVME  540
PELAEQVQPS SIGHAEKKRS TAEKNISLDV LRKYFSGSLK DAAKSLGVCP TTLKRICRHH  600
GISRWPSRKI NKVNRSLKKI QTVINSVHGV DRSLQYDPAT GSLVPVVSLP EKLTFPSCDG  660
LPTPSVGKTV EENSDLKSEE GCSLPDGSQR QSCQLQISDV KKSNEDEFHI GSGNSDFYGA  720
NATAKSNSEV TQGPLCPTGA FSALHLKGTD CTNPSSSLRP SSESTRDQIV GRNSPSIQQE  780
DLDMLDSHEA KDKDHMHPST SGMTDSSSGS ASSHPTFKQN TRSALKDTAS PALTVKATYN  840
EDTVRFKFLP SMGWYHLLEE IAKRFKLPTG AFQLKYKDDE DEWVILANDS DLQECVDVLD  900
SIGSRNVKLQ QTEPHDSVAI RVYDAFAAKR HGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539504.1_FGP009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060753	0.0	AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
GenBank	AK103154	0.0	AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0E0PB03	0.0	A0A0E0PB03_ORYRU; Uncharacterized protein
STRING	ORUFI04G18750.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-168	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]