PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539502.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 216aa MW: 24083.9 Da PI: 5.6518

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539502.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	14	65	1	47
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEd++l+ + +G W++Ia++++ gRt++++k++w+++ KN539502.1_FGP006 14 RGPWTAEEDKKLISFILTHGRCcwravpKWSKIAAKLP-GRTDNEIKNHWNTH 65 89****************88************.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.81E-17	3	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.813	9	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-22	9	71	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-14	13	68	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-16	14	65	IPR001005	SANT/Myb domain
CDD	cd00167	6.84E-14	16	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGRQPCCDKK KVKRGPWTAE EDKKLISFIL THGRCCWRAV PKWSKIAAKL PGRTDNEIKN 60 HWNTHIKKKL IKMGIDPATH QPLPNTKVVS QTGTSTQSTV TTESAKSNGM AYPFDPEGGC 120 SRDMSVPTDS MEQSSRNTSS HGLDPMVNWL LEAELPADEP WLDFTSSNED DFSGIVKQSA 180 WDGSTTDWLL DYQDFSMDDS SLIDGARVQN SDGLNF

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539502.1_FGP006

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069869	0.0	AK069869.1 Oryza sativa Japonica Group cDNA clone:J023038A16, full insert sequence.
GenBank	AP004704	0.0	AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBank	AP006265	0.0	AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650714.1	1e-148	protein ODORANT1
Refseq	XP_015650715.1	1e-148	protein ODORANT1
Refseq	XP_015650716.1	1e-148	protein ODORANT1
Swissprot	Q50EX6	3e-46	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A0E0QM23	1e-146	A0A0E0QM23_ORYRU; Uncharacterized protein
TrEMBL	A2YXT3	1e-146	A2YXT3_ORYSI; Uncharacterized protein
TrEMBL	Q6YSZ5	1e-146	Q6YSZ5_ORYSJ; Putative Myb13 protein
STRING	ORUFI08G25210.1	1e-147	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	2e-42	myb domain protein 42

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]