PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539501.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 32340 Da PI: 10.0192 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.3 | 4e-42 | 10 | 125 | 1 | 115 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d KN539501.1_FGP004 10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 100 69****************************.9***************943444442456********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapk 115 k+++ ++ +g++ktLvfy gr + KN539501.1_FGP004 101 KAIFLANACRIGMRKTLVFY-GRPAS 125 ********************.55444 PP | |||||||
2 | NAM | 169.7 | 9.7e-53 | 138 | 267 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d KN539501.1_FGP004 138 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 228 69****************************.9***************943444442456********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++ ++ +g++ktLvfy grap+g+ktdW+mheyrl KN539501.1_FGP004 229 KAIFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 267 *************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-42 | 5 | 127 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.92 | 10 | 120 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-21 | 11 | 124 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-54 | 129 | 271 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.203 | 138 | 279 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-28 | 139 | 267 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY 120 GRPASKRRMH PSGGALSVPP GFRFHPTDEE LLYYYLRKKV SYEAIDLDVI REIDLNKLEP 180 WDLKDRCRIG TGPQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKA IFLANACRIG 240 MRKTLVFYVG RAPHGKKTDW IMHEYRLDQD NVDVQIGAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 8 | 267 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 8 | 267 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 8 | 267 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 8 | 267 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 8 | 267 | 18 | 145 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 8 | 267 | 15 | 142 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 8 | 267 | 15 | 142 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539501.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028186 | 0.0 | AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds. | |||
GenBank | AK102224 | 0.0 | AK102224.1 Oryza sativa Japonica Group cDNA clone:J033087M22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644283.1 | 1e-104 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-105 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0D3GHE4 | 1e-103 | A0A0D3GHE4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PYP4 | 1e-103 | A0A0E0PYP4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0WXJ0 | 1e-105 | A0A0P0WXJ0_ORYSJ; Os06g0530400 protein | ||||
STRING | ORUFI06G18140.1 | 1e-103 | (Oryza rufipogon) | ||||
STRING | OS06T0530400-01 | 1e-106 | (Oryza sativa) | ||||
STRING | OBART06G17120.1 | 1e-103 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-75 | NAC family protein |
Publications ? help Back to Top | |||
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