PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539494.1_FGP008

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 395aa MW: 41143.3 Da PI: 7.8158

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539494.1_FGP008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	31.1	8.2e-10	124	204	71	149
DUF822 71 kgskpl..eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvsss 149 +g+kp+ e+++ +g+sas sp+ss+q +sp++sy++sp+sssfps+ s+++i++ + +sl+p+l++l+l+ss KN539494.1_FGP008 124 QGCKPPqaERPDPIGRSASPSPCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITIGGNsliggvegSSLIPWLKTLPLSSSY 204 89999999*************........***********************98899*99*****99986664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.0E-15	123	198	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MGGWRRGGSC CLLFLLSFRL VPSTTSAGAI LDATAICVSA ASSVSLCFGF LLRCALSIFA 60 SIRAGLMSNH LKMACAALLV FSNGGNAMRG KKVFKAAGSV DDACFNGEVI DKYEHNRVPL 120 TCIQGCKPPQ AERPDPIGRS ASPSPCSSYQ PSPRASYNPS PASSSFPSSG SSSHITIGGN 180 SLIGGVEGSS LIPWLKTLPL SSSYASSSKF PQLHHLYFNG GSISAPVTPP SSSPTRTPRL 240 RTDWENASVQ PPWASANYTS LPNSTPPSPG HKIAPDPAWL AGFQISSAGP SSPTYNLVSP 300 NPFGIFKEAI ASTSRVCTPG QSGTCSPVMG GMPAHHDVQM VDGAPDDFAF GSSSNGNNES 360 PGLVKAWEGE RIHEECASDE LELTLGSSKT RADPS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MGGWRRGGSC CLLFLLSFRL VPSTTSAGAI LDATAICVSA ASSVSLCFGF LLRCALSIFA  60
SIRAGLMSNH LKMACAALLV FSNGGNAMRG KKVFKAAGSV DDACFNGEVI DKYEHNRVPL  120
TCIQGCKPPQ AERPDPIGRS ASPSPCSSYQ PSPRASYNPS PASSSFPSSG SSSHITIGGN  180
SLIGGVEGSS LIPWLKTLPL SSSYASSSKF PQLHHLYFNG GSISAPVTPP SSSPTRTPRL  240
RTDWENASVQ PPWASANYTS LPNSTPPSPG HKIAPDPAWL AGFQISSAGP SSPTYNLVSP  300
NPFGIFKEAI ASTSRVCTPG QSGTCSPVMG GMPAHHDVQM VDGAPDDFAF GSSSNGNNES  360
PGLVKAWEGE RIHEECASDE LELTLGSSKT RADPS

Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539494.1_FGP008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641160.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	B9FTQ3	0.0	B9FTQ3_ORYSJ; Uncharacterized protein
STRING	OGLUM06G19210.1	0.0	(Oryza glumipatula)
STRING	ORUFI06G19240.1	0.0	(Oryza rufipogon)
STRING	ONIVA06G21540.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	9e-38	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]