PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539491.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 430aa    MW: 45587.7 Da    PI: 6.7957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539491.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-165195147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r +WT eE+ l+++a +++G   W++I +++g ++t+ q++s+ qk+
  KN539491.1_FGP001 51 REKWTDEEHRLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 95
                       789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-164599IPR009057Homeodomain-like
PROSITE profilePS5129420.80246100IPR017930Myb domain
TIGRFAMsTIGR015571.8E-154998IPR006447Myb domain, plants
SMARTSM007172.2E-135098IPR001005SANT/Myb domain
PfamPF002495.1E-145194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-95191IPR009057Homeodomain-like
CDDcd001672.22E-105396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MATDENGADD RAGGESTVDH LRSHMNYGDM DLSGEEHVPK ARKPYTITKQ REKWTDEEHR  60
LFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVV RESSGSNTGS GGASAAAAAA  120
AIQIPPPRPK RKPAHPYPRK VDGAAKKHVP ALRQLEKPPL RMQSLSEQEE GSPTSVLTAA  180
QIGTEALGGG FSNYSSGSGS LAPSAAGTDE HVDGGGSPAS SVDREDGCLS PSIPTAELAM  240
QAPNTKISIA TTDAKEASSE ASVFRLFGKS VVVKDSDQLH LLSGSNIATS GSVERATRSI  300
LVPSFAAAPE GSSSNPWPSS MQQVLYFLPR SDGLAAQPVM PWFSYNGSLP CALFYPAAAA  360
AANQQCHRDS EGVEFRASQR EGSLTGSNTA SSVRGFMPYK RCAAESELLR SEAAGGEEAV  420
ADGELTRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539491.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117260.0AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623484.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A0D9YWK20.0A0A0D9YWK2_9ORYZ; Uncharacterized protein
STRINGOGLUM02G28780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.15e-36MYB_related family protein