PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539485.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23432.2 Da    PI: 8.1974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539485.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-251058250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       rien  +rqvtf+kRr g+lKKA+ELSvLCda++ v++fs++gk+ye +
  KN539485.1_FGP005 10 RIENPVRRQVTFCKRRMGLLKKAKELSVLCDADIGVVVFSPHGKIYELA 58
                       8*********************************************965 PP
2K-box56.98.8e-20871731499
              K-box  14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                            qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++l+ ++ie l++ke  l+ +n  L++++ 
  KN539485.1_FGP005  87 PMVIQQDVLFLRREVNLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQERII 173
                        45579**********************868****************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.142161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27176IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.56E-36273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2382172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.7487179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARGKVQMRR IENPVRRQVT FCKRRMGLLK KAKELSVLCD ADIGVVVFSP HGKIYELATN  60
GNMEGLIERY KSNLPEAQVE STEQNIPMVI QQDVLFLRRE VNLLQNSLRY MYGEKDINHM  120
NLGELQSLES NLEVWVNNIR STKMQLMSRE IEMLKNKEGI LKAANDILQE RIIEQTSILD  180
VRGNMMIPQV PFQLTTESND YF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539485.1_FGP005
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194477.11e-116MADS-box transcription factor 26-like
RefseqXP_020194478.11e-116MADS-box transcription factor 26-like
SwissprotA2YQK92e-75MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-75MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0D3FW891e-142A0A0D3FW89_9ORYZ; Uncharacterized protein
STRINGOBART04G13770.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-57AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]