PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539485.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 581aa MW: 65841.5 Da PI: 6.7269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539485.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+d KN539485.1_FGP003 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRD 100 69**************************.99**********963433332566***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k + + + +++g++ktLvfy+grap+g+ktdW+mheyrle KN539485.1_FGP003 101 KCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139 9.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-54	5	144	IPR003441	NAC domain
PROSITE profile	PS51005	52.923	10	160	IPR003441	NAC domain
Pfam	PF02365	4.2E-27	11	138	IPR003441	NAC domain
Pfam	PF08583	9.4E-7	162	202	IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like
Gene3D	G3DSA:3.20.20.70	4.4E-127	205	573	IPR013785	Aldolase-type TIM barrel
CDD	cd02933	1.04E-170	211	551	No hit	No description
SuperFamily	SSF51395	3.95E-108	211	570	No hit	No description
Pfam	PF00724	4.5E-78	212	547	IPR001155	NADH:flavin oxidoreductase/NADH oxidase, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0010181	Molecular Function	FMN binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEYRLED ADDSQSASSF PSTQCNVHLL QIIEAFQKCH VDHPVKKFFG 180 ECTDLKIKLD QCFRQETSRG AGEREKMDPV PLFNPCEMGR FTFSHRIVLA PLTRARSYGN 240 LPQSHAILYY SQRATKGGLL IAEATGVSSD APCTNTPGIW TKEQVEAWKP VVDAVHAKGG 300 IFFCQIWHVG RASDLEQEPI SSTDKPVEKN EDMDFPVPRR LAVEEIPDVI NHFRIAARNA 360 IDAGFDGVEV HGAHGFLLEQ FMKDGVNDRT DQYGGSLQNR CRFALEVVDA VSTEVGPDRV 420 GFRISPYISY FGCHDSDPDA LGVYMARELD RRGVLYCSAV EPEMVAATTA VDGETTTMSR 480 RMMMIPHRLH GMREAFRRGM FMVGGGYDRD AGNMAVASGY ADMVVFGRLF LANPDLPRRF 540 QLDAPLNKYD RATFYTHDPV VGYTDYPFLD DDREAMSDHT G

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWDLQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDSQSASSF PSTQCNVHLL QIIEAFQKCH VDHPVKKFFG  180
ECTDLKIKLD QCFRQETSRG AGEREKMDPV PLFNPCEMGR FTFSHRIVLA PLTRARSYGN  240
LPQSHAILYY SQRATKGGLL IAEATGVSSD APCTNTPGIW TKEQVEAWKP VVDAVHAKGG  300
IFFCQIWHVG RASDLEQEPI SSTDKPVEKN EDMDFPVPRR LAVEEIPDVI NHFRIAARNA  360
IDAGFDGVEV HGAHGFLLEQ FMKDGVNDRT DQYGGSLQNR CRFALEVVDA VSTEVGPDRV  420
GFRISPYISY FGCHDSDPDA LGVYMARELD RRGVLYCSAV EPEMVAATTA VDGETTTMSR  480
RMMMIPHRLH GMREAFRRGM FMVGGGYDRD AGNMAVASGY ADMVVFGRLF LANPDLPRRF  540
QLDAPLNKYD RATFYTHDPV VGYTDYPFLD DDREAMSDHT G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1vji_A	1e-159	205	570	5	369	12-oxophytodienoate reductase (OPR1)
2q3r_A	1e-159	205	570	5	369	12-oxophytodienoate reductase 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539485.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073836	0.0	AK073836.1 Oryza sativa Japonica Group cDNA clone:J033069H04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620839.1	0.0	putative 12-oxophytodienoate reductase 13 isoform X1
Refseq	XP_015637023.1	0.0	putative 12-oxophytodienoate reductase 13 isoform X1
Swissprot	B9FFD3	0.0	OPR13_ORYSJ; Putative 12-oxophytodienoate reductase 13
TrEMBL	A0A0E0H1C4	0.0	A0A0E0H1C4_ORYNI; Uncharacterized protein
STRING	ONIVA04G12040.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP197	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	2e-83	NAC domain containing protein 70

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]