PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539483.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 268aa    MW: 28977.5 Da    PI: 8.9085
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539483.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33109166259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers++dp++v++tYeg+H+h+
  KN539483.1_FGP006 109 EDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHP 166
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3593168IPR003657WRKY domain
SuperFamilySSF1182902.09E-29100168IPR003657WRKY domain
PROSITE profilePS5081130.572103168IPR003657WRKY domain
SMARTSM007742.7E-39108167IPR003657WRKY domain
PfamPF031063.6E-27109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSGPGGGGGH GLYEDHPAAG FLPFDHDDDV VASFFFGRSA ASGGGAGAGA GAGDDDGVGL  60
ITPYSSITDY LQGFLQDPVM NKTKNKKGAK KEREPRVAFM TKSEVDHLED GYRWRKYGQK  120
AVKNSSYPRS YYRCTAPRCG VKKRVERSEQ DPSMVITTYE GQHTHPSPVS YHMHRQQGLM  180
HVSARAVMPG AAAAYQFGAP PPPLLGFDEA LAARVRMTMN QQQQQQQLGF VPSMHAAAAA  240
ARPTMPPLHL YTAQQDLLPS VTGSHHGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2899168877Probable WRKY transcription factor 4
2lex_A8e-2899168877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539483.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095680.0AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence.
GenBankAY8706000.0AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637709.11e-107WRKY transcription factor 23 isoform X2
TrEMBLA0A0D3GBB41e-105A0A0D3GBB4_9ORYZ; Uncharacterized protein
STRINGOBART05G27250.11e-106(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.14e-43WRKY DNA-binding protein 28