PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539478.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 384aa MW: 41712.6 Da PI: 8.8333

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539478.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.6	1.2e-13	13	48	21	48
RWP-RK 21 AAkeLg........vclTvLKriCRqyGIkRWPhRk 48 AA++L+ vc++vLKriCR +GI RWP+Rk KN539478.1_FGP001 13 AAQQLNelwggfagVCTSVLKRICRSHGIVRWPYRK 48 78888888888888*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.808	1	73	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-12	13	48	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MWARSVAWLD LRAAQQLNEL WGGFAGVCTS VLKRICRSHG IVRWPYRKQL VALTIYKLLT 60 ELLLRNKRPS SEASITAPVA SGMHLVRALI ENWRWQPLPW RKQTEDMLVS GKSGDDTKNA 120 EREKAKGLLE ISKVAKQKAL SASGLSTVIL LTICCLSMDA GAVEWDIGLV TSSLHQAPYD 180 DLLSLLKRFA AFVLTLKSGH IDRSPGAFQG VAKSQQGSSK AGQVSPPGKQ NVLGGSAILS 240 YGTQTKGIPT YMDDFKYGFP SSGLSLQTMK WWGTDSHTET TPAKDDNSEA PESANEASKG 300 MTDDELDWGA DEAEAEADAD SAITTEPSAQ LCSLRRKAVD DGRKLLTGKS CGGLELCRLN 360 KRQKMALAQA FGASLPEQLR SKLG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MWARSVAWLD LRAAQQLNEL WGGFAGVCTS VLKRICRSHG IVRWPYRKQL VALTIYKLLT  60
ELLLRNKRPS SEASITAPVA SGMHLVRALI ENWRWQPLPW RKQTEDMLVS GKSGDDTKNA  120
EREKAKGLLE ISKVAKQKAL SASGLSTVIL LTICCLSMDA GAVEWDIGLV TSSLHQAPYD  180
DLLSLLKRFA AFVLTLKSGH IDRSPGAFQG VAKSQQGSSK AGQVSPPGKQ NVLGGSAILS  240
YGTQTKGIPT YMDDFKYGFP SSGLSLQTMK WWGTDSHTET TPAKDDNSEA PESANEASKG  300
MTDDELDWGA DEAEAEADAD SAITTEPSAQ LCSLRRKAVD DGRKLLTGKS CGGLELCRLN  360
KRQKMALAQA FGASLPEQLR SKLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539478.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007789	0.0	AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBank	AP003074	0.0	AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625714.1	1e-127	uncharacterized protein LOC4326758
TrEMBL	B9EUN6	1e-176	B9EUN6_ORYSJ; Uncharacterized protein
STRING	ORUFI01G10030.2	1e-170	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42