PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539478.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 384aa    MW: 41712.6 Da    PI: 8.8333
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539478.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK42.61.2e-1313482148
             RWP-RK 21 AAkeLg........vclTvLKriCRqyGIkRWPhRk 48
                       AA++L+        vc++vLKriCR +GI RWP+Rk
  KN539478.1_FGP001 13 AAQQLNelwggfagVCTSVLKRICRSHGIVRWPYRK 48
                       78888888888888*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151910.808173IPR003035RWP-RK domain
PfamPF020423.8E-121348IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MWARSVAWLD LRAAQQLNEL WGGFAGVCTS VLKRICRSHG IVRWPYRKQL VALTIYKLLT  60
ELLLRNKRPS SEASITAPVA SGMHLVRALI ENWRWQPLPW RKQTEDMLVS GKSGDDTKNA  120
EREKAKGLLE ISKVAKQKAL SASGLSTVIL LTICCLSMDA GAVEWDIGLV TSSLHQAPYD  180
DLLSLLKRFA AFVLTLKSGH IDRSPGAFQG VAKSQQGSSK AGQVSPPGKQ NVLGGSAILS  240
YGTQTKGIPT YMDDFKYGFP SSGLSLQTMK WWGTDSHTET TPAKDDNSEA PESANEASKG  300
MTDDELDWGA DEAEAEADAD SAITTEPSAQ LCSLRRKAVD DGRKLLTGKS CGGLELCRLN  360
KRQKMALAQA FGASLPEQLR SKLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539478.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077890.0AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBankAP0030740.0AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625714.11e-127uncharacterized protein LOC4326758
TrEMBLB9EUN61e-176B9EUN6_ORYSJ; Uncharacterized protein
STRINGORUFI01G10030.21e-170(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242