PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539461.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 1196aa    MW: 133867 Da    PI: 6.6071
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539461.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.3e-31269323155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl
  KN539461.1_FGP012 269 KARLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 323
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.393266326IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-30267324IPR009057Homeodomain-like
SuperFamilySSF466892.51E-16267323IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24269324IPR006447Myb domain, plants
PfamPF002491.2E-7271322IPR001005SANT/Myb domain
PfamPF143791.1E-21359404IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF049371.1E-45725870IPR007021Domain of unknown function DUF659
SuperFamilySSF530986.98E-277391120IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1196 aa     Download sequence    Send to blast
MSSQSVVAVK QIAAPDKIVE TCPSTKHSVH KLFDVKPDFQ GLMDDNLSSS SQSSSIKIEL  60
IRSSSLPNIL PFQKRSSEPE PESPLSHVSH PNVSEPVYSN SSTFCASLFS SSSMETEPCR  120
QLGTLPFLPH PPKCEQQVSA GHSSCSSLLV PGGDGDIGNA HDEPEQSDDL KDFLNLSGGD  180
ASDGSFHGEN NAMAFAEQME FQFLSEQLGI AITDNEESPR LDDIYGTPPQ LSSLPVSSCS  240
NQSVQKAGSP VKVQLSSPRS SSGSATTNKA RLRWTLELHE RFVEAVNKLD GPEKATPKGV  300
LKLMKVEGLT IYHVKSHLQK YRLAKYLPET KEDKKASSED KKSQSGSSGN DSVKKKNLQV  360
AEALRMQMEV QKQLHEQLEV QRQLQLRIEE HARYLQRILE EQHKVSISSN SLSLKPPAES  420
QPESPKPTSE KKEAESEAGA ATSAQPSSED KSPDAECKSS PPVCTTQDTQ RRRLEKEKHG  480
KTVDKETQKV SCNYCGKVVR TYNRLEHHLA GIRGNVYPCS LVPDSVRQSI KSSLEARKKD  540
WIARKIGKHK SSELPPVRNL SLTSAHACRP LLQPITSDTD REGSVSGHRC FVHFTNNLVQ  600
PGETTQVNAH DVSCNASSYQ QGGQTIEVTR PPYQNPCMMN KQPEMSSGQR IDPLSFSMEN  660
SSSQMQDSEF SKEPTNDYLN SQARKSIGKL IFEAGLEPGI LHLPSFKNMV DVLAWAQVSI  720
PTYESIMEEQ LREIQCHARD LKKHWEMNGC SVILDTWESR CGKSFISVLV HCSKGMLFIK  780
SMDVSDIIDD VDELAAMLFR VVEEVGVLNI VQIITNDESP YMQAAEHAVL KRYGYSFFFT  840
LCADHCINLL LENIAALDHV NEVLIKAREI TRFIYSHAVP MELKGKYIQG GEILSSSNLK  900
FVAMFITLGK LVSERINLVE MFSSPEWASS DLASRSSFRH VYEVVKTDNA FWSAAADILK  960
LTDPLITVLY KLEADNCPIG ILYDAMDCAK EDIKCNLRDK HGDYWPMVDE IWDHYLHTPV  1020
HAAGYILNPR IFYTDRFSYD TEIKSGTNAC VTRLAKNHYD PKKVAIQMDR YRRKSAPFDS  1080
DSAIQQTVEI PQVRWWSVHG TDTPELQTFA IRILSQTCFG ASTYNIDRSI SEQLHVVKRT  1140
YPEQERFRTM EYLHYNLRLA HCEPCVRGAS GAQQHSRLTS QLGDWISSGQ TTSYYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-26269326259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539461.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644149.10.0uncharacterized protein LOC4341991 isoform X1
TrEMBLB8B2630.0B8B263_ORYSI; Uncharacterized protein
STRINGORGLA06G0222700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.27e-64G2-like family protein