PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539456.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 2306aa    MW: 256443 Da    PI: 6.2979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539456.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  KN539456.1_FGP007  5 KQKWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 55
                       79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.732161IPR017930Myb domain
SuperFamilySSF466894.16E-14263IPR009057Homeodomain-like
SMARTSM007179.4E-8459IPR001005SANT/Myb domain
PfamPF002491.0E-6556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-12556IPR009057Homeodomain-like
CDDcd116602.05E-19657No hitNo description
SuperFamilySSF467852.67E-14115195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.3E-11116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.123118186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.3E-13118188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.4E-7123179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF546951.1E-9436474IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.105.2E-8439460No hitNo description
Gene3DG3DSA:3.30.710.105.2E-8529597No hitNo description
SuperFamilySSF546951.1E-9542597IPR011333SKP1/BTB/POZ domain
PROSITE profilePS5164989.721695977IPR027356NPH3 domain
PfamPF030004.9E-84695953IPR027356NPH3 domain
SuperFamilySSF552771.92E-1112111269IPR003169GYF domain
PROSITE profilePS508299.90412161263IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.8E-412181268IPR003169GYF domain
Gene3DG3DSA:2.170.270.101.8E-2918781950No hitNo description
Gene3DG3DSA:2.170.270.101.8E-2920002114No hitNo description
SuperFamilySSF821999.81E-2620282114No hitNo description
PROSITE profilePS5028010.55920322160IPR001214SET domain
SMARTSM003171.0E-820322141IPR001214SET domain
PfamPF008563.2E-820442147IPR001214SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 2306 aa     Download sequence    Send to blast
MGAPKQKWTA EEESALKAGI AKHGAGKWRT ILKDPDFSNV LRYRSNVDLK DKWRNMNVTV  60
NASGARDRVK APVVKKPRSA PKHEGHSTST AIAAVTSDGD DDVAEPVPLA TSTSSKRSLS  120
RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR  180
KYRIAPSSSL SEGRSSKVVL LEDIKKEPTK LDREDVAVLT KSQIDAELAR MRTMTAEEAA  240
AAAARAVAEA EAIMAEAEAA VREAEAAEAD AVAAQAFAEA AMATFKNRSS AKLVIALSTS  300
VLVSNDHSSL KLPVGAGAAS VSSDLVLFLM DNMVMLQRDV FNLVWLLFNS KSLKGPCILL  360
FGCRSSTRIG SVWFLFRFVG GELRKKNTFL WGFGRIEMED ISSLKLQDLL MSHLVHKSDA  420
SRLMPMLTYI LMTDELYCTT GLPSDVLVEV GEMSFHLHKM HEAICTTLLV IMENFEEMSF  480
NEQPQLTFCT PSYSRNFDES YSYSHSYWLI LKRVKKAFIS DFFPLYLFPL LSKSAILGRL  540
IEENSDSDEC VIKLSDIPGG AKSFELVARF CYGLKIELSS ENVVYLRCAA EHLEMTEETS  600
GDNLINQTES FFNQVVLRSW KDSLEALRTC DGLLPHAEDL HIVKRCIESL AGKASIDPDL  660
FGWPVSEHST MQSPGGSVLW NGISTGAKVR NCSSDWWYDD ASFLSFPTYK RLISSMESRG  720
IKQEIIAGSL TYCAKKFLPG LNRRQSTGPM PLPAATLSDE EQRRLLEEID RMLPLQRGLI  780
STNVLLWLLR TAMILKVDRA CISNLEKRVG MQLDEATLED LLLPNFSYTM DTLYNVECVH  840
RILDHFLAMD QTMGGGGASP CLDDVMASPS LAPITAVAKL IDGYLAEIAP DINLKPLKFQ  900
SLAAALPEYA RPLDDGLYRA IDVYLKSHPT LPEAEREQLC RLIDCQKLSL EACTHAAQNE  960
RLPLRVVVQV LFFEQLQLRT SVAGCLLVSD NLEASSRTLR GGAVAGSGSR GADPCRGRKR  1020
GRLLTLEEEE EEEEEEESGM EGCSAPACGD VRGDFVGWCS DRHQVASFSG DQTQSASMFA  1080
AMQENACSID SKGVVCPQSG LGYSAGQNGT HGGGGSMQHQ NFEGCMYMNQ LGQMCGPYPP  1140
EQLYDGLSTG FLHRDLAIYA VFGGKMANPV SLGSLKQFLS QWSSDSVVAT RDESAENKKM  1200
APVNKLILPD NLSSEESCWM FEDAEGRRHG PHSLAELSYW HHSSYLHDLS MIYHVDSKFG  1260
PFTLVSLIDW WSGGTEHSES SANDSGSLNA LMDDVVEDIS HQLHAGIMKS ARKVFIDEIF  1320
SSVLPEMIAC RKTEKQMAAK RKSQAAKTDN VSNKNALVLK GKGDGTSTRP KSLNSYNNKV  1380
PEDPSVAVQS TAIQYEFADI LSAVWETIYN KSMKSIWDEV LYDPVMDYCD AWLKRKNESN  1440
LLSTVVPGAS DNQKMQDTDE MSPKAICDSD APESDMDFPP GFGPNRESAE HSHSACVEYV  1500
TEKTDGRSGS STTLFSGPLG RVQERIRTPV HAPEPSSPPG ISVHETPSPA EMPRDEISDM  1560
AEMARDEISD MAVDTIPCPA DMAASGTSTV PEVTTDKLII PYVEHQSPSA SHASIFEKLD  1620
VHEEAELDDS FDEVPPGTEA GLASLVIMEK NKYQSSKSVD SVPDIYRYTN WAFFRQILHE  1680
SVMKEWASLF SGALSNCFDS WYARKNIVAK TMDDTLRPKE YTYYRKRKLR KNCEASSSEK  1740
PMDEQLSRPL RDLVECKVNM KNIHRSSKAG ISQRVSVVEK PSKKRAKPSH NDNINLNIQQ  1800
DLKLLSDKVP KRNRSSHPTS KPLVSNKVPT EDRTTSAMPA KKRKQKNLAT ESNLKTKAVI  1860
LSPESHGCEA PTEKRTTAIM PVNKRKKNLS GESKLKAKPL TSPESYVCEA PIDNRTTSTM  1920
PAKKRKQKNL SNESNLKKKP LVLCPESYGC ARASVSGWEW RDWARNATPS ERAQVRGYRV  1980
RSILSAPENN VLKSSQVKGS SARTNRVKLR NLLAAAEGTD LLKIMQSKSR KKRLRFQRSK  2040
IHEWGLVALE SIDAEDFVIE YVGELIRRQV SDIREDQYEK SGIGSSYLFR LDDDYVVDAT  2100
KRGGLARFIN HSCDVPRINE LGSKVYKSGG NCNWVLPQYV CVMRACRLYW AEVHCRNVLG  2160
FTDRMVRWTN SGYPEEGQQH YYIDWIEDIE FTRYMDAFNL SSVVYVYVFR PEKKSIRIMW  2220
SAWVDTDVHE YLISQSCERW AQGIFTPSTN LDAQQIHQGL DLESRQEARD AAGPAVVLSY  2280
AVSGVSAMLS VFCYTEFAVE IPVAGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bx3_E1e-3120002130100234Histone-lysine N-methyltransferase, H3 lysine-4 specific
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539456.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682500.0AK068250.1 Oryza sativa Japonica Group cDNA clone:J013139B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JCD60.0A0A0E0JCD6_ORYNI; Uncharacterized protein
STRINGONIVA12G17610.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-56telomere repeat binding factor 1