PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539443.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 269aa MW: 31119 Da PI: 7.6612

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539443.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.5	4.1e-26	130	179	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl KN539443.1_FGP011 130 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 179 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.395	114	199	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-21	131	179	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDAAAAAVST LSALAVFAST LDHGAVRSVH GYKVYGRGGR RRWERNPRLM CVPSLYNDLE 60 KVFRFQNVEK IPKLMQCDSE EKLSSWDARD KSSDEVHASE SDDSDDDLQS GEEEKSTVQK 120 QRRANKKHIA SITLVDIAQY FHLPIREASR TLKIGVSILK RKCRQYNIPR WPHRKIKSLD 180 SLIQDLEYVI DDGDDHDDTG DDVQQEKHKQ TAEEKQEAIM ALTRRKQMLE TEKETIQQIP 240 AMDLKVETKQ FREDVFKRRY RAKKDLAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	264	RRYRAKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539443.1_FGP011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	1e-137	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	1e-137	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-137	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	1e-147	protein RKD5 isoform X1
TrEMBL	A0A0E0DH82	1e-147	A0A0E0DH82_9ORYZ; Uncharacterized protein
STRING	OMERI04G17610.1	1e-148	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-36	RWP-RK domain-containing protein