PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539441.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 173aa    MW: 19689.7 Da    PI: 5.6316
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539441.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-18449147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ 
  KN539441.1_FGP011  4 RGHWRPSEDEKLKELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                       899*****************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.683154IPR017930Myb domain
SMARTSM007171.9E-15352IPR001005SANT/Myb domain
PfamPF002493.3E-18449IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-21577IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-28563IPR009057Homeodomain-like
CDDcd001679.06E-15748No hitNo description
PROSITE profilePS500904.6585192IPR017877Myb-like domain
SMARTSM00717445594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-46486IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEELLLAS HRAHGNRGMA MASLLDKYRR ECGAAGLFAI GRHHNSKEGY CSSTNEDTSK  120
SVEFYDFLQV NASSSDTKCG SSIEEQEDNR DDDQAEGQVQ LIDFMEVGTT SRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-21185185C-Myb DNA-Binding Domain
1msf_C3e-21185185C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539441.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115601e-158AK111560.1 Oryza sativa Japonica Group cDNA clone:J013060F16, full insert sequence.
GenBankCT8288351e-158CT828835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025H22, full insert sequence.
GenBankCT8327831e-158CT832783.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA045C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628938.13e-61transcription factor MYB52
TrEMBLA0A2S3IIL82e-82A0A2S3IIL8_9POAL; Uncharacterized protein
TrEMBLA0A2S3IIP62e-82A0A2S3IIP6_9POAL; Uncharacterized protein
STRINGOPUNC03G29370.17e-74(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-48myb domain protein 52