PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539434.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 344aa    MW: 38118.8 Da    PI: 4.6308
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539434.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  KN539434.1_FGP010  9 KRIENSTNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                       79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.758161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002653.93E-38278No hitNo description
SuperFamilySSF554552.35E-29278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRVKLQIKR IENSTNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVLTRY INLPESDRGG SSSKAPVNSN IEELQQEIRR CQQQMQLTEE QLRMFEPDPA  120
RSASMEDVEA SEKFIAGILS RVEERKRYLL CSMGSFDVTA STSAMQHVRK SIFLKLARLY  180
LPQQHQHGDI NGNGFGSDEV ASWVSEGMPP TTSSVASIFA GTSDSMMSFR DQAVYDTMRQ  240
DACVDQTVVP EMGMCHVDQQ NQSDDWQAYT SAEFLNALIP PTPFPLDDED TMGPVLASSP  300
PLMPGIHDQQ PPEEDMATAG CSQAPANDGN GLYAAEDIAP VNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17181182MEF2C
5f28_B2e-17181182MEF2C
5f28_C2e-17181182MEF2C
5f28_D2e-17181182MEF2C
6bz1_A2e-17175174MEF2 CHIMERA
6bz1_B2e-17175174MEF2 CHIMERA
6bz1_C2e-17175174MEF2 CHIMERA
6bz1_D2e-17175174MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539434.1_FGP010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117760.0AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence.
GenBankFN6631300.0FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641968.20.0agamous-like MADS-box protein AGL66
TrEMBLA0A0E0A6Z50.0A0A0E0A6Z5_9ORYZ; Uncharacterized protein
STRINGOGLUM06G08350.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-54AGAMOUS-like 66