PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539430.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 711aa    MW: 79557.8 Da    PI: 8.3628
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539430.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.55.8e-20247335288
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        +Yn+YAk+ GF +++s+ kks+ ++   +++f C+ e +++e++ k    +++r+ ++  +t+Cka+++v k+  +kw+vt ++l+HnH+
  KN539430.1_FGP005 247 YYNRYAKSWGFGTKVSSCKKSNVTKDYNRYEFACYSERTSKEQNAKssiGSRSRKCNSIRKTDCKARMVVVKR-AEKWVVTIVDLDHNHP 335
                        8*************************************9999988878888999999**************99.9**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-18247335IPR004330FAR1 DNA binding domain
PfamPF044342.6E-5473521IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.953486522IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-5497524IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MPQPPRAHRA IQNNGNGDNV NKYQSCLPIL LSIARYRARY LEGDANYILG LHGQYLISAD  60
TQPEHSSALI GGVEKSMSSS VGSIERRMED LQNMGAGACV SAETSVNEHA ASVGEKGSDA  120
EVLGAALLEA GIVAGPTSIL QVDAGVGFEI ETANRTDGSE MEAETSVNEQ ATSVGEKDTD  180
VEVLRAALLE AGIVTGPTSI LQVDTGDVFE IEPATTTEGS EMEGVQSQPV VPFVGMEFFS  240
EKEARVYYNR YAKSWGFGTK VSSCKKSNVT KDYNRYEFAC YSERTSKEQN AKSSIGSRSR  300
KCNSIRKTDC KARMVVVKRA EKWVVTIVDL DHNHPPLSPN SVRHELRGNK YMQHLYDNRK  360
KWVCCFFMDY FFPFMSTSQR SESMNKLFKD FVHPADSIRN FIFQYEKLAQ SCLDRDDNQR  420
FITVQTDPKM WSGYPMEEQA SKFYTHAMFE EFQEMLYRAT KYKTINGPEP RSYFVQLILD  480
DDSKKFLVHY DINNETYSCA CKKFQRDKIL CGHVLKVMTQ LNVYVVPEKY MCDRWTLRGS  540
EHATSTLVPA QNDEGASRKM RYISLCKKSA TVASDACKTR QGYDLAKKTI DDLQATLVMM  600
NSMRQADHTP SLNQTSGSKD SVADVTTLKD PKKKVSRGRP KNSTRLKSVL DDTSGLTGRK  660
KKKPSHSSPA DDTSGLTGRK KKKPSHSSPA SSKKKKLDDT SCLDCDDPTR W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1680695KKKPSHSSPASSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539430.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639432.12e-97protein FAR1-RELATED SEQUENCE 5
TrEMBLB8B5S70.0B8B5S7_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-30FAR1 family protein