PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539415.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 412aa    MW: 46221.9 Da    PI: 6.3797
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539415.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.42.1e-472144112202
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        + lL++cA+a+++++++ a +lL++++++   +gd+mqR+a+yf+++L+arla s+++ly+  +  +    + +e l+++kl+  ++ + k+
  KN539415.1_FGP012 214 RMLLIQCAQAMATDNQQSAGELLKKIKQHTLATGDAMQRVAHYFAKGLEARLACSGKHLYQ--NQVRL---SLVEYLKVYKLYMAACCFTKV 300
                        679*********************************************************5..33333...389****************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        + + a  +I++av+g++r+Hi+D++   G++Wp Ll+ L +R++gpp++RiT v+  ++g    +++ee g+ L++ A+e++vpf+f++++a
  KN539415.1_FGP012 301 ALMFAAMTIMQAVQGKKRLHIVDYGPRCGMHWPDLLRRLGNREDGPPEVRITIVDILQPGfrPFQRIEEAGHCLSSCANEFHVPFRFQAVAA 392
                        ********************************************************9999999**************************999 PP

               GRAS 184 krledleleeLrvkpgEal 202
                         +++++  e+L+++p+E +
  KN539415.1_FGP012 393 AKWKTVGAEDLHIEPDELI 411
                        9***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.981187412IPR005202Transcription factor GRAS
PfamPF035147.3E-45214411IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MANPEDFFWE ALLKENEAPS PPPVFFDLPP TPLANSDGTD PSSLDNQLLS YVSRMLMEDE  60
MGSSAAITNL QCVNRGSTEE ANNMLPSSEV VRAFSKGMEE ASKLLPRNNS FRTLETVDQV  120
SSDGHCRGRK NKNHDRDEQQ LEEELSRSSK LAALTIAGTQ EAGARELLDE LMLHTHETCI  180
KDMEKLRIDM DNEAEKKINK KDKKGSSSKV VDLRMLLIQC AQAMATDNQQ SAGELLKKIK  240
QHTLATGDAM QRVAHYFAKG LEARLACSGK HLYQNQVRLS LVEYLKVYKL YMAACCFTKV  300
ALMFAAMTIM QAVQGKKRLH IVDYGPRCGM HWPDLLRRLG NREDGPPEVR ITIVDILQPG  360
FRPFQRIEEA GHCLSSCANE FHVPFRFQAV AAAKWKTVGA EDLHIEPDEL IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-162174118203GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240LKKIKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539415.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616387.10.0scarecrow-like protein 9
TrEMBLI1R2B40.0I1R2B4_ORYGL; Uncharacterized protein
STRINGORGLA11G0190600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.16e-52GRAS family protein