PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539386.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 586aa MW: 64360.8 Da PI: 6.1046

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539386.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.2e-10	218	251	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k rr+++NReAAr+sR+RKka+i++Le +L KN539386.1_FGP002 218 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKL 251 788*************************865555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-7	214	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	216	260	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.53E-23	218	270	No hit	No description
Pfam	PF00170	2.7E-7	218	253	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.96E-7	218	261	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-7	219	262	No hit	No description
PROSITE pattern	PS00036	0	221	236	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-32	300	375	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MPPPLPLHFL MVFLFSHSPA HFCMLCAVYL LVLASFFVLF SEQIWVLDCY CMQWAGKFAT 60 NATECHTNLN NMQPTQVTDF GALAQSAGFR IEDLANLSTN GLFNLKSNAH TIINDPLQFE 120 NYGKSISPSN ITTTATVTVV DPQTLVPQKG AQLNLVTIRT GNVENWGEST MADTSPRTDT 180 STDPDTDERN QMQFEQGQLA APTASDSSDR SKDKLDHKTL RRLAQNREAA RKSRLRKKAY 240 IQNLESSRLK LTQIEQELQR ARQQGIFIST SSDQSHSASG NGALAFDMEY ARWLEEHNKH 300 INELRAAVNA HAGDNDLRST VDSIMAHYDE IFKLKGVAAK ADVFHVLSGM WKTPAERCFM 360 WLGGFRSSEL LKLLAGQLEP LTEQQLAGIA NLQQSSQQAE DALSQGMEAL QQSLAETLAS 420 GSLGPAGSSG NVANYMGQMA MAMGKLGTLE NFLRQLLAGQ LEPLTEQQLA GIANLQQSSQ 480 QAEDALSQGM EALQQSLAET LASGSLGPAG SSGNVANYMG QMAMAMGKLG TLENFLRQAD 540 NLRLQTLQQM QRILTTRQSA RALLAISDYF SRLRALSSLW LARPRE

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MPPPLPLHFL MVFLFSHSPA HFCMLCAVYL LVLASFFVLF SEQIWVLDCY CMQWAGKFAT  60
NATECHTNLN NMQPTQVTDF GALAQSAGFR IEDLANLSTN GLFNLKSNAH TIINDPLQFE  120
NYGKSISPSN ITTTATVTVV DPQTLVPQKG AQLNLVTIRT GNVENWGEST MADTSPRTDT  180
STDPDTDERN QMQFEQGQLA APTASDSSDR SKDKLDHKTL RRLAQNREAA RKSRLRKKAY  240
IQNLESSRLK LTQIEQELQR ARQQGIFIST SSDQSHSASG NGALAFDMEY ARWLEEHNKH  300
INELRAAVNA HAGDNDLRST VDSIMAHYDE IFKLKGVAAK ADVFHVLSGM WKTPAERCFM  360
WLGGFRSSEL LKLLAGQLEP LTEQQLAGIA NLQQSSQQAE DALSQGMEAL QQSLAETLAS  420
GSLGPAGSSG NVANYMGQMA MAMGKLGTLE NFLRQLLAGQ LEPLTEQQLA GIANLQQSSQ  480
QAEDALSQGM EALQQSLAET LASGSLGPAG SSGNVANYMG QMAMAMGKLG TLENFLRQAD  540
NLRLQTLQQM QRILTTRQSA RALLAISDYF SRLRALSSLW LARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539386.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY620415	0.0	AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015699294.1	0.0	PREDICTED: transcription factor HBP-1b(c1)-like isoform X1
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A2ZYT9	0.0	A2ZYT9_ORYSJ; Uncharacterized protein
STRING	OMERI01G31190.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-126	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]