PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539366.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 129aa MW: 14406.3 Da PI: 10.4666 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 136 | 4.6e-42 | 23 | 104 | 95 | 170 |
YABBY 95 svssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++++ + +++ e+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl KN539366.1_FGP002 23 NAPAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 104 222333345557788888998877678*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.9E-40 | 16 | 104 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.18E-8 | 42 | 97 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.2E-5 | 53 | 96 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEQAASASLS SITGRSSSSC ASNAPAMQMP PAKPVQQEPE LPKNAPASAN RPPEKRQRVP 60 SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI HFGLMPDQGF KKTFKPQDYL 120 RTPYWPIHL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539366.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 0.0 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 0.0 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622736.1 | 4e-81 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 4e-82 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 4e-82 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0D3F851 | 9e-80 | A0A0D3F851_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YVL2 | 9e-80 | A0A0D9YVL2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CP17 | 9e-80 | A0A0E0CP17_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GAC6 | 9e-80 | A0A0E0GAC6_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1P2J5 | 9e-80 | I1P2J5_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G26190.1 | 2e-80 | (Oryza glumipatula) | ||||
STRING | OMERI02G24350.1 | 2e-80 | (Oryza meridionalis) | ||||
STRING | OS02T0643200-01 | 2e-80 | (Oryza sativa) | ||||
STRING | ONIVA02G28110.1 | 2e-80 | (Oryza nivara) | ||||
STRING | ORGLA02G0220100.1 | 2e-80 | (Oryza glaberrima) | ||||
STRING | OBART02G25670.1 | 2e-80 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-40 | YABBY family protein |
Publications ? help Back to Top | |||
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