PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539361.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 266aa    MW: 28754.9 Da    PI: 9.7901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539361.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.82.4e-09177196221
                        --SS-EEEEEEE--TT-SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefp 21 
                         D ++WrKYGqK++kgs++p
  KN539361.1_FGP006 177 ADVWAWRKYGQKPIKGSPYP 196
                        69*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-8162196IPR003657WRKY domain
PROSITE profilePS5081111.761171196IPR003657WRKY domain
SuperFamilySSF1182902.35E-6174196IPR003657WRKY domain
PfamPF031069.1E-5178196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEEELCGNNW DLDAVVRLGC CRRTISPAAV AQQVDPFASF LQQGVAMEVA AEKEVGVEAA  60
WSFPELTVRD GGGGRGLGRD ADELLKAFCA AFPSSSSSKS SPLPTPPPPP PPPPTQPEQQ  120
QKPVTTVQEN PPAPTTASPA RASAARQVPA GGVPRSKRRK NQQKKVVRHV PADGVSADVW  180
AWRKYGQKPI KGSPYPSRGA LLFLALPFSV QQPNLSACRS LGMFDWDLNS HHSSLFLHPQ  240
LLMRSVPMES MKALGKVKEK QGRVYC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539361.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667750.0AK066775.1 Oryza sativa Japonica Group cDNA clone:J013074N21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623400.11e-90probable WRKY transcription factor 27
TrEMBLA0A0D9YQ583e-89A0A0D9YQ58_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G4N13e-89A0A0E0G4N1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NCQ53e-89A0A0E0NCQ5_ORYRU; Uncharacterized protein
TrEMBLQ6ETY23e-89Q6ETY2_ORYSJ; Os02g0265200 protein
TrEMBLQ6IEP23e-89Q6IEP2_ORYSI; WRKY transcription factor 39
STRINGOGLUM02G11370.14e-90(Oryza glumipatula)
STRINGORUFI02G11490.15e-90(Oryza rufipogon)
STRINGOS02T0265200-015e-90(Oryza sativa)
STRINGONIVA02G12780.15e-90(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-10WRKY family protein