PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539358.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 915aa    MW: 100469 Da    PI: 6.509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539358.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182785357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++ +q+kvWFqNrR ++k+
  KN539358.1_FGP006 27 KYVRYTPEQVEALERVYADCPKPTSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                       5678****************************************************996 PP
2START167.21.1e-521653722204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++  e+   i  g  g++
  KN539358.1_FGP006 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRNLEVFTMIPAGngGTV 255
                        789*******************************************************9999988888.****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+   s+++vRae+lpSg+l++p+++g+s v++v+h dl+++++++
  KN539358.1_FGP006 256 ELVYTQLYAPTTLVPaRDFWTIRYTTTMEDGSLVVCERSLSGSGGGPSaasSQQYVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 347
                        *****************************************999999999999*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s+++ ++k+++a+l++ +
  KN539358.1_FGP006 348 VLRPLYESSRVVAQKMTTAALRHIR 372
                        *********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-18985IPR009057Homeodomain-like
PROSITE profilePS5007115.4672286IPR001356Homeobox domain
SMARTSM003894.1E-162490IPR001356Homeobox domain
SuperFamilySSF466897.7E-162688IPR009057Homeodomain-like
CDDcd000861.35E-162787No hitNo description
PfamPF000469.3E-162885IPR001356Homeobox domain
CDDcd146866.58E-679118No hitNo description
PROSITE profilePS5084828.107155383IPR002913START domain
CDDcd088758.12E-70159375No hitNo description
SMARTSM002349.0E-41164374IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-22164350IPR023393START-like domain
SuperFamilySSF559617.97E-37164376No hitNo description
PfamPF018523.6E-50165372IPR002913START domain
PfamPF086703.2E-46714853IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MAAAVAMRGS SSDGGGYDKV SGMDSGKYVR YTPEQVEALE RVYADCPKPT SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTPLANDT SCESNVTTPQ NPLRDASNPS GLLSIAEETL TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFRDCRN  240
LEVFTMIPAG NGGTVELVYT QLYAPTTLVP ARDFWTIRYT TTMEDGSLVV CERSLSGSGG  300
GPSAASSQQY VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG  420
GDGVEDVVIA CNSTKKIRSS SNAGIAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASTLKTSACS LPGLRPMRFS GSQIIIPLAH TVENEEILEV VRLEGQPLTH  540
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDDFPDE TPLISSGFRV IPLDMKTLEL  600
IEAFGFKYSL GKIKQDGASS GRTLDLASSL EVGSATAQAS GDASADDCNL RSVLTIAFQF  660
PYELHLQDSV AAMARQYVRS IVSAVQRVSM AISPSQTGLN AGQRIISGFP EAATLARWVC  720
QSYHYHLGVE LLSQSDGDAE QLLKMLWHYQ DAILCCSFKE KPVFTFANKA GLDMLETSLV  780
ALQDLTLDRI FDEPGKEALF SNIPKLMEQG HVYLPSGVCM SGMGRHVSFD QAVAWKVLAE  840
DSNVHCLAFC FVNCHLAIGF FASEMKLVHE YETELDWPKH SATGILIQKR TIRVANKATM  900
EDKRLGLAKR PQLFS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539358.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023780.0AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence.
GenBankAY4259910.0AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649248.10.0PREDICTED: homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A0E0J4U40.0A0A0E0J4U4_ORYNI; Uncharacterized protein
STRINGONIVA11G21180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein