PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539349.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 149aa MW: 16953.1 Da PI: 9.7717 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 4.1e-33 | 70 | 128 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ KN539349.1_FGP001 70 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 128 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-34 | 56 | 128 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-29 | 62 | 129 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.885 | 65 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-38 | 70 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 71 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MENLQLQGDD HDDEALPHFP YFAAAESSGA AGNKEKQVME KGGAGRPSGT KKKASRPRFA 60 FQTRSDNDIL DDGYRWRKYG QKAVKNSKHP RSYYRCTHHT CNVKKQVQRL AKDTSIVVTT 120 YEGVHNHPCE KLMEALTPIL KQLQFLSQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-26 | 60 | 127 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-26 | 60 | 127 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539349.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108909 | 0.0 | AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence. | |||
GenBank | AY341845 | 0.0 | AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds. | |||
GenBank | AY870607 | 0.0 | AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876574.1 | 5e-86 | probable WRKY transcription factor 24 | ||||
Swissprot | Q9FFS3 | 9e-57 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A0D3ETQ0 | 1e-84 | A0A0D3ETQ0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YEL5 | 1e-84 | A0A0D9YEL5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FSR7 | 1e-84 | A0A0E0FSR7_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8A921 | 1e-84 | B8A921_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NRG7 | 1e-84 | I1NRG7_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q942D2 | 1e-84 | Q942D2_ORYSJ; Os01g0734000 protein | ||||
STRING | OGLUM01G34020.1 | 2e-85 | (Oryza glumipatula) | ||||
STRING | OS01T0734000-01 | 2e-85 | (Oryza sativa) | ||||
STRING | ONIVA01G34250.1 | 2e-85 | (Oryza nivara) | ||||
STRING | ORGLA01G0245700.1 | 2e-85 | (Oryza glaberrima) | ||||
STRING | OBART01G29960.1 | 2e-85 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 4e-59 | WRKY DNA-binding protein 24 |