PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539343.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 271aa    MW: 30355.2 Da    PI: 8.4895
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539343.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.5e-091577656
                       S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                       +ft+e++ e+e+l +   n  p+ + ++ LA++           g+  +qV +WFqNr++ ++
  KN539343.1_FGP004 15 RFTQEEVAEMESLLRHlnNGIPDGSVIQSLADRFtasaaragkvGVRPKQVWYWFQNRKYSQR 77
                       69***********99554999***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-101484IPR009057Homeodomain-like
CDDcd000860.006751580No hitNo description
PfamPF000461.4E-61577IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-51583IPR009057Homeodomain-like
PROSITE profilePS500719.6531579IPR001356Homeobox domain
PfamPF167192.6E-37113240IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRPPTPSTG GPGFRFTQEE VAEMESLLRH LNNGIPDGSV IQSLADRFTA SAARAGKVGV  60
RPKQVWYWFQ NRKYSQRSRN STKMLPVVSG DHKSASTRSS VQKSVKNSLE GGQLEFEAKS  120
ARDGAWYDVS AFLSHRLSQC GELEVWVRFS GFGARDDEWI DVRTCVRQRS HPCVPTECAA  180
VLPGDQILCF QEGKHQALYF DAHVLDAQKR RHDARGCRCR FLVCYDHDDS EEIVPLRKMC  240
RRPETDYRLK ILHAAGAADA AKEAVVDSVI A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-471122442134SHH1 SAWADEE
4iur_B7e-471122442134SHH1 SAWADEE
4iut_A7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-471122442134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539343.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996920.0AK099692.1 Oryza sativa Japonica Group cDNA clone:J013073N05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641091.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641092.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641093.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641094.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641095.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641096.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ77e-99SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0E0LBN21e-175A0A0E0LBN2_ORYPU; Uncharacterized protein
STRINGOPUNC06G13910.11e-176(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.18e-92sequence-specific DNA binding transcription factors;sequence-specific DNA binding