PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539343.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 368aa    MW: 40869.9 Da    PI: 7.5781
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539343.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-091375656
                       S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                       +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  KN539343.1_FGP001 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
                       69*************776999***************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-81280IPR009057Homeodomain-like
SuperFamilySSF466896.84E-111278IPR009057Homeodomain-like
PfamPF000461.9E-61375IPR001356Homeobox domain
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
PfamPF167192.6E-41126253IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP  60
KQVWNWFQNR RYSHRSRSSR GPPTLMQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG  120
SLESGQVEFE AKSARDGAWY DVAAFLSHRL FESGDPEVRV RFSGFGAEED EWINVRKCVR  180
QRSLPCESTE CVAVLPGDLI LCFQEGKEQA LYFDARVLDA QRRRHDVRGC RCRFLVRYDH  240
DHSEEIVPLR KVCRRPETDY RLQILHAARA AGMAKEAVVD LVSHNDKSSA EQKPPKQHKM  300
MDVNTDEVTM VSNQDQEEPT GKPAATLPAA PVKTLNDSAS ASDVQMGEAQ AAPKVESSDE  360
VEDKMKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-471242571134SHH1 SAWADEE
4iur_B4e-471242571134SHH1 SAWADEE
4iut_A4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-471242571134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539343.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1042820.0AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-128SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0E0LBP40.0A0A0E0LBP4_ORYPU; Uncharacterized protein
STRINGOPUNC06G13990.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-106sequence-specific DNA binding transcription factors;sequence-specific DNA binding