PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539341.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 974aa    MW: 107490 Da    PI: 5.2652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539341.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-121862147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  KN539341.1_FGP004 18 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 62
                       789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-151268IPR009057Homeodomain-like
PROSITE profilePS5129414.6281367IPR017930Myb domain
TIGRFAMsTIGR015575.0E-181665IPR006447Myb domain, plants
SMARTSM007172.7E-101765IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-51758IPR009057Homeodomain-like
PfamPF002495.1E-101862IPR001005SANT/Myb domain
CDDcd001674.43E-72063No hitNo description
PfamPF101913.6E-287241969IPR019335Conserved oligomeric Golgi complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0007030Biological ProcessGolgi organization
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009933Biological Processmeristem structural organization
GO:0010016Biological Processshoot system morphogenesis
GO:0016049Biological Processcell growth
GO:0045053Biological Processprotein retention in Golgi apparatus
GO:0005829Cellular Componentcytosol
GO:0017119Cellular ComponentGolgi transport complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MGEEERKVRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAYVGSK TVIQIRSHAQ  60
KYFLKVQKNG TGEHLPPPRP KRKAAHPYPQ KASKNVSPAA ISQPPPLGEQ GCVMSMDTSP  120
VIRNTNASAV VPSWDNSIAQ PLSASRTQGT GAVATNNCSS SIESPSTTWP TSEAVEQENM  180
LRPLRAMPDF AQVYSFLGSI FDPDTSGHLQ TLKAMDPIDV ETVLLLMRNL SMNLTSPNFA  240
AHAEGSSAES ITALARIDTV KQRMEAAYAT LQDAAGLAQL SQSVEDVFSS GDLPKAAETL  300
ATMRHCLSAV GEVAEFANVR KQLEVLEERL DDMVQPRLVD ALSNRKPTNF GWKVDAVQDL  360
RGILIRIGRF KSLEVQYTKI HVKPLKKLWE DFDLKQRAKR VEMEKYGGES INSLSFASWL  420
PNFYDETLLY LEQEWKWCLT AFPEEYKSLV PKVLVETMSE LNSSFISRVN LATGDAVPET  480
RSVAKGILDV LSGDLPKSTK LQNKHLGALI DLHNMTGTFA RNIQHLFSES DLVVLLNTLK  540
AIYSPYETFK ARYGQMERAL LFAEMAGIDI RGAIARGVGA QGIELSETVR RMEESIPQII  600
VLLEAAVERC ISLTGGSEAD ELVLALDDIM LQYISNLQET LKSLRIVCGV DNTAHSDSSK  660
KEAGLEKKEA QRLVDVSEEE EWSIVQGALQ ILTVADCLTS RTSVFEASLR ATLARIGTNF  720
SISGFGSSLD KSTAANGDEN AEVPITGRAA LDIAAIRLTD LPDKSKKLFT SKDPRFHALP  780
LTSQRVAAFS DTVNELVYDV LISKVRQRLN EVARLPIWSS VEEQGGLPLP SFSAYPQAYV  840
TSVGEYLLTL PQQLEPLAEG ISGSEAGNEE AQFFATEWIF KVAEGATALF MEQLRGIHYI  900
TDRGAQQLAA DIEYLSNVLS ALSMPIPPFL ATFHTCISTP RDQVRDLIKS DGGSQLDLPT  960
AHLVCKIRRI SSSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539341.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889290.0AK288929.1 Oryza sativa Japonica Group cDNA, clone: J090082H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643052.10.0conserved oligomeric Golgi complex subunit 7
TrEMBLA0A0E0AD170.0A0A0E0AD17_9ORYZ; Uncharacterized protein
STRINGOGLUM06G25490.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1108922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-74MYB_related family protein