PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539336.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 513aa MW: 57374.2 Da PI: 5.3679 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 86.4 | 3e-27 | 90 | 191 | 1 | 99 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 q+ fw ++ ie ++df +h +P+ar+kki+ +++ mi+ + P++lsk celf+ el++r+w a++ +r + +dia+av++t+ + KN539336.1_FGP013 90 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMITFDMPAFLSKMCELFVQELAVRAWACAQSHNRCIILDTDIAEAVASTESY 181 68899*7655669******************************************************************************* PP NF-YC 90 dflvdivprd 99 dflvdi ++ KN539336.1_FGP013 182 DFLVDILHNH 191 *****98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00125 | 2.7E-10 | 95 | 175 | IPR007125 | Histone H2A/H2B/H3 |
SuperFamily | SSF47113 | 6.54E-17 | 97 | 189 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.0E-20 | 114 | 188 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MKIHGFQTRF HLHHRAFIEP RAISTYSYVR CNILLYVQYC FEKNVIMFAI KLAISFCGTV 60 YHLEQQREAM EQTLDVHRSL RPPMPMAQQQ MDEFWRDRQK EIEMTKDFSE HMIPMARLKK 120 IVSSQKGNMM ITFDMPAFLS KMCELFVQEL AVRAWACAQS HNRCIILDTD IAEAVASTES 180 YDFLVDILHN HSVKQKSTPC SSTKCCRLVD QPSASHIPHQ HLLPQFAPTY TSAIPITPSL 240 MPLISQCTPS SFPSLPQEMF PLMAPTPIVN RSMLFIDNIA RGLGLQGNNI NAVTNNNILD 300 NIVGCSSPAV LASMMNPALL GPLGAPLNPP NSQSYNCTMD IINSNDACGS NNSSVIVADQ 360 ANIAPSGHFY PITLQSSCPT FLHSNNNDTI TAIPEGVDIS DIMHVTSNVD AATKVFSGQE 420 EQHEKETNIE WHHQNEIYES IDIGIINATT RDGNKCSISW DELGMADDSL LDNFLEELQV 480 RKDDVSDTRI AFNKDPFLDD VVLSNPSTSN SNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-18 | 100 | 188 | 5 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539336.1_FGP013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003205 | 0.0 | AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04. | |||
GenBank | AP003852 | 0.0 | AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635714.1 | 0.0 | uncharacterized protein LOC4326495 isoform X1 | ||||
TrEMBL | A0A0E0HH02 | 0.0 | A0A0E0HH02_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G23940.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 9e-26 | nuclear factor Y, subunit C4 |