PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539327.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 592aa    MW: 65255.4 Da    PI: 8.1466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539327.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-1754100148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT+eEde+l +av  + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  KN539327.1_FGP006  54 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 100
                        688*****************************.************986 PP
2Myb_DNA-binding59.29.3e-19106152148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l
  KN539327.1_FGP006 106 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 152
                        79******************************.*************97 PP
3Myb_DNA-binding52.71e-16158201146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + +WT+eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  KN539327.1_FGP006 158 KEAWTAEEESVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 201
                        579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.29449100IPR017930Myb domain
SMARTSM007175.8E-1553102IPR001005SANT/Myb domain
PfamPF002493.0E-1554100IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-1655110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2256112IPR009057Homeodomain-like
CDDcd001675.55E-1457100No hitNo description
PROSITE profilePS5129430.661101156IPR017930Myb domain
SuperFamilySSF466893.18E-31103199IPR009057Homeodomain-like
SMARTSM007174.1E-17105154IPR001005SANT/Myb domain
PfamPF002496.8E-17106152IPR001005SANT/Myb domain
CDDcd001671.29E-15108152No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25113158IPR009057Homeodomain-like
SMARTSM007171.6E-14157205IPR001005SANT/Myb domain
PROSITE profilePS5129421.317157207IPR017930Myb domain
PfamPF002494.3E-15158201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-22159207IPR009057Homeodomain-like
CDDcd001671.58E-11160203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MPAVKVEEEE ERNPVASSPS VSEGSAQAAA LASPTAADSI FGRRRKSGPV RRAKGGWTPE  60
EDEKLRKAVD IYNGKNWKKI AESFSDRTEV QCLHRWQKVL DPELIKGPWT QEEDDVIINM  120
VKKHGPKKWS VIARSLNGRI GKQCRERWHN HLDPQIRKEA WTAEEESVLA RAHCMYGNKW  180
AEIAKLLPGR TDNSIKNHWN SSLRKKIDDY NTRDILPVHP PVVGDDLKQL PKRPPADNHF  240
DLNKEPIICS RDRLGVVHSD PTSHQRASNL KDFKGCADYL SLGQPVTSCE ASAADDSAFD  300
LATQGMRMDS VHDKGTGNNF VCGKVQGINF LGDKGLKINQ ISDKMGCSRQ AKREGEAAIN  360
GGGSSLQSES HPVGSLCYQI PKMEDIAPAQ SPVFTANYVP EHSRNVMHSP NGYTTPPTHG  420
KGSDQLSVES ILRSAAEKFH GTPSILRRRK RDKLTPAEDN DLKIGKLSSD DFHTPIGKCT  480
TDSPQSFKTA ALLSLGPMDE QGSLDVSPPY RLRSKRLAVL KTVQNHLDFS SDEMSICDTT  540
MKSACGNSDC ANASSGVSSI QGKKLDEHMI GLETLTMNFA HTTKLDATQP NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-69532075159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-69532075159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446453RRRKRDKL
2447452RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539327.1_FGP006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0PNI70.0A0A0E0PNI7_ORYRU; Uncharacterized protein
TrEMBLB9FJH50.0B9FJH5_ORYSJ; Uncharacterized protein
STRINGORUFI05G20390.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-103myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]