PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539326.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 20442.4 Da PI: 9.8936 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.7 | 1.9e-31 | 106 | 164 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+ KN539326.1_FGP004 106 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPTDPSMLIVTYEGEHRHT 164 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.5E-9 | 84 | 103 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-32 | 93 | 164 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 100 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 103 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.4E-37 | 105 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 107 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDLMSGYGRV DEQVAIQEAA AAGLRGMEHL ILQLSQTGTS ERSPAPAPAQ EQQQQQVDCR 60 EITDMTVSKF KKVISMLNRT GHARKHRVKR TIRVPAISSK VADIPADDFS WRKYGQKPIK 120 GSPFPRGYYK CSTLRGCPAR KHVERDPTDP SMLIVTYEGE HRHTPSAAGQ DHPPAPPPPL 180 ALPLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 93 | 163 | 2 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539326.1_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100954 | 1e-167 | AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence. | |||
GenBank | AK121494 | 1e-167 | AK121494.1 Oryza sativa Japonica Group cDNA clone:J033000L17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633572.1 | 6e-58 | WRKY transcription factor WRKY51 | ||||
Swissprot | Q0JEE2 | 5e-59 | WRK51_ORYSJ; WRKY transcription factor WRKY51 | ||||
TrEMBL | A0A0E0DC00 | 4e-61 | A0A0E0DC00_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G19410.1 | 1e-69 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-47 | WRKY DNA-binding protein 11 |