PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539302.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 432aa MW: 48746.3 Da PI: 5.0676

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539302.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	96.3	3.2e-30	1	85	9	102
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 ++ed+++++++sw g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+++ll++i+r+ KN539302.1_FGP011 1 MVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLLKNIHRR 83 89******************************************************999.........*******************9 PP XX CS HSF_DNA-bind 101 ks 102 k KN539302.1_FGP011 84 KP 85 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	8.71E-30	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-32	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.1E-27	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	1.8E-47	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-10	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-10	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MVEDAATNHV VSWGPGGASF VVWNPLDFSR DLLPKYFKHN NFSSFIRQLN TYGFRKIDPE 60 RWEFANEDFI RGHTHLLKNI HRRKPVHSHS LQNQINGPLA ESERRELEEE INRLKYEKSI 120 LVADLQRQNQ QQYVINWQMQ AMEGRLVAME QRQKNIVASL CEMLQRRGGA VSSSLLESDH 180 FSKKRRVPKM DLFVDDCAAG EEQKVFQFQG IGTDAPAMPP VLPVTNGEAF DRVELSLVSL 240 EKLFQRANDA CTAAEEMYSH GHGGTEPSTA ICPEEMNTAP METGIDLQLP ASLHPRSPST 300 GNAHLHLSTE LTESPGFVQS PELPMAEIRE DIHVTRYPTQ ADVNSEIASS TDTSQDGTSE 360 TEASHGPTND VFWERFLTET PRSCLDESER QESLKDDVKA ELGCNGFHHR EKVDQITEQM 420 GHLASAEQTL HT

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MVEDAATNHV VSWGPGGASF VVWNPLDFSR DLLPKYFKHN NFSSFIRQLN TYGFRKIDPE  60
RWEFANEDFI RGHTHLLKNI HRRKPVHSHS LQNQINGPLA ESERRELEEE INRLKYEKSI  120
LVADLQRQNQ QQYVINWQMQ AMEGRLVAME QRQKNIVASL CEMLQRRGGA VSSSLLESDH  180
FSKKRRVPKM DLFVDDCAAG EEQKVFQFQG IGTDAPAMPP VLPVTNGEAF DRVELSLVSL  240
EKLFQRANDA CTAAEEMYSH GHGGTEPSTA ICPEEMNTAP METGIDLQLP ASLHPRSPST  300
GNAHLHLSTE LTESPGFVQS PELPMAEIRE DIHVTRYPTQ ADVNSEIASS TDTSQDGTSE  360
TEASHGPTND VFWERFLTET PRSCLDESER QESLKDDVKA ELGCNGFHHR EKVDQITEQM  420
GHLASAEQTL HT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-19	1	83	27	120	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539302.1_FGP011

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:12032317}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB050096	0.0	AB050096.1 Oryza sativa Japonica Group Spl7 mRNA for heat stress transcription factor Spl7, complete cds.
GenBank	AK100412	0.0	AK100412.1 Oryza sativa Japonica Group cDNA clone:J023087K12, full insert sequence.
GenBank	AY344492	0.0	AY344492.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639851.1	0.0	heat stress transcription factor A-4d
Swissprot	Q93VB5	0.0	HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBL	A0A0D3GA29	0.0	A0A0D3GA29_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0A1Y0	0.0	A0A0E0A1Y0_9ORYZ; Uncharacterized protein
STRING	OGLUM05G25010.1	0.0	(Oryza glumipatula)
STRING	OBART05G23630.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3296	37	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	2e-63	heat shock transcription factor A4A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Kojo K, et al. Regulatory mechanisms of ROI generation are affected by rice spl mutations. Plant Cell Physiol., 2006. 47(8): p. 1035-44 [PMID:16816407]