PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539300.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 162aa    MW: 17991.4 Da    PI: 7.0849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539300.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-071445132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       +g+WT+eEd++lv      G  +W+++++  g
  KN539300.1_FGP004 14 KGPWTAEEDQKLVSFLLGNGQCCWRAVPKLAG 45
                       79***************************998 PP
2Myb_DNA-binding316.1e-1061832447
                       HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                       W++Ia++++ gRt++++k++w+++
  KN539300.1_FGP004 61 WSKIASHLP-GRTDNEIKNHWNTH 83
                       *********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-8543IPR009057Homeodomain-like
PROSITE profilePS5129415.644988IPR017930Myb domain
SMARTSM007172.1E-111386IPR001005SANT/Myb domain
PfamPF002491.8E-51445IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-121485IPR009057Homeodomain-like
CDDcd001674.36E-101684No hitNo description
PfamPF002491.5E-76183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-126192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL GNGQCCWRAV PKLAGESPTS PEFQSRSLIW  60
WSKIASHLPG RTDNEIKNHW NTHIKKKLRK MGIDPVTHKP LYPAPPLADG GSPEQKVPEE  120
EEVEEKSSAA VESSTSTGAG HDVFCTDEAS FRYMCLAYIH VN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539300.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-141CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610941.17e-72transcription factor MYB20
SwissprotQ9C7U73e-49MYB20_ARATH; Transcription factor MYB20
TrEMBLI1QNT51e-73I1QNT5_ORYGL; Uncharacterized protein
STRINGORGLA09G0071400.12e-74(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-50myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]