PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539290.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 750aa    MW: 80648.6 Da    PI: 3.9244
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539290.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM721.6e-2281471128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..d 89 
                        lppG+rF+P  +elv+++  +++++++l+l   i+e+d +++ Pw+L + +  + +e +fF++ + k+ +gkr++r +   g+W+ +    d
  KN539290.1_FGP001   8 LPPGVRFDPAADELVSRHFLRRLRKQPLPLRGLIHEADPLSAPPWKLLADHGRGGDEAFFFAEVRAKNVKGKRQKRtVEGGGFWQGQRVcvD 99 
                        79****************************999**************877777889********************555599**96654223 PP

                NAM  90 kevlsk.......kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                         e l+        +  +       + k +L f+ ++ +kg ++ Wvmhey++
  KN539290.1_FGP001 100 GERLRVpgdgdggE--VgggleiEWRKYMLSFF-ADGEKG-SSGWVMHEYAI 147
                        33333356565440..15666647777788899.555554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-274166IPR003441NAC domain
PROSITE profilePS5100525.618166IPR003441NAC domain
PfamPF023651.0E-129146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MAAAADGLPP GVRFDPAADE LVSRHFLRRL RKQPLPLRGL IHEADPLSAP PWKLLADHGR  60
GGDEAFFFAE VRAKNVKGKR QKRTVEGGGF WQGQRVCVDG ERLRVPGDGD GGEVGGGLEI  120
EWRKYMLSFF ADGEKGSSGW VMHEYAITAP ADLASSPIRL YRVRFSGHGK KRKREPERLG  180
ARVHDDDVDG GQRAAPRRAV AETALFVQPS AVDCAESAGQ SFSGAIEPVF HDLPDMMPEQ  240
ADAGDTAETT AEVVNLTDAM SEQPVLPLAA DGDDQSSYSV IDPAFRDLAD LIVLPPEPDD  300
GGMERATPWT PMSETALFEQ QGPPLAPGNA DCADHQCSYG VIDPAFCEQA DAGEAETTVS  360
AEVVNQNYSM ASCDFNFPEV LSYVDFTAGM EPSWQQRWPP MSESAPFEQQ EPPLAPVAMV  420
DLPPGNADCA DHQSCSRVID PAFRDLPDMT VLPPEQADTG GGAETTTAMV SLTDKLKYSS  480
SMDGEAAQAW CDFDFPESTD EEVLSYINFT AGAHDDNDGS VERAAPWRPA SETAMFEQPS  540
AVDLPPGDAD CAESADQRFS GVIEPVFRDL RNMIREQADA GDTAETTAAV VNQNYSMALC  600
DFDFPESTDE ALSYIDFTAG AHTDNDGGVS ETAMFEQPGS PPQHDPLPMD ADGADQSSSS  660
GLLIGTVFRD HAEPIVLPLE QADAGGGAAA AVNPMDKQKY SSSMDGEAAP AWCDSDFPES  720
IDDVLSYIDF STDDTSCIDF SMDDLFDLAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539290.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLA0A0D9Y4M10.0A0A0D9Y4M1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06950.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-08NAC domain containing protein 58