PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539271.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 201aa MW: 22399.8 Da PI: 5.5928 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 85 | 1.3e-26 | 1 | 87 | 106 | 197 |
GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +e+e+ vH+iD++ +QW+ Ll+ La+Rpegpp+lR+T v++ +ke l +t+ L+k Ae+l+vpf+fn+ v++rl++l++e+Lr k KN539271.1_FGP007 1 MESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VVSRLDALDVESLRPK 87 68899***************************************....9**************************.7************755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.5E-24 | 1 | 87 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 14.974 | 1 | 201 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MESEKIVHVI DLGGADATQW LELLHLLAAR PEGPPHLRLT SVHEHKELLT QTAMALTKEA 60 ERLDVPFQFN PVVSRLDALD VESLRPKAVA VLLAKTGMLG SDAPFLFLTN GKDEWFFPQK 120 FAFGLSFSRT CLLPSGNRIA AACSHCGFYL FFMLFILNQV VKIAYWSLQK EENVEEENKG 180 YKDPGEACNP ASLAGWAFVS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-15 | 2 | 108 | 125 | 237 | Protein SCARECROW |
5b3h_A | 1e-15 | 2 | 108 | 124 | 236 | Protein SCARECROW |
5b3h_D | 1e-15 | 2 | 108 | 124 | 236 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539271.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287540 | 1e-138 | AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence. | |||
GenBank | AP003259 | 1e-138 | AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10. | |||
GenBank | AP014957 | 1e-138 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-138 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LPR8 | 2e-31 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
STRING | ONIVA01G49810.1 | 3e-50 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 7e-34 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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