PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539267.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 156aa MW: 17747.6 Da PI: 8.7627 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.9 | 1.5e-12 | 62 | 91 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++ LAk+l+L rqV vWFqNrRa+ k KN539267.1_FGP013 62 PKQKVALAKSLNLRPRQVEVWFQNRRARTK 91 678999**********************98 PP | |||||||
2 | HD-ZIP_I/II | 78.2 | 1.4e-25 | 61 | 125 | 25 | 86 |
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd...alkeenerLekevee 86 +p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++ +l+ +++r++ ve+ KN539267.1_FGP013 61 SPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWIKckvNLVFDKCRIDPSVES 125 69*****************************************9875222455666666665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0033 | 39 | 97 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-12 | 61 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.18E-8 | 61 | 94 | No hit | No description |
SuperFamily | SSF46689 | 1.15E-10 | 61 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.293 | 61 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-10 | 62 | 91 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAAAVA EDERFACSPG 60 SPKQKVALAK SLNLRPRQVE VWFQNRRART KLKQTEVDCE HLKRWIKCKV NLVFDKCRID 120 PSVESLVVSK HKWELNQLLT VHLDWELVYR LVSYVN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 93 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539267.1_FGP013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 1e-96 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CT830896 | 1e-96 | CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642539.1 | 2e-39 | homeobox-leucine zipper protein HOX28 | ||||
Swissprot | A2Y931 | 2e-40 | HOX28_ORYSI; Homeobox-leucine zipper protein HOX28 | ||||
Swissprot | Q5VPE5 | 2e-40 | HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28 | ||||
TrEMBL | A0A0D3GCK9 | 2e-41 | A0A0D3GCK9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G02540.1 | 4e-42 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-22 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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