PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539264.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 16817.5 Da PI: 4.286 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 15 | 43 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd++l+ +++q+G g+W++ + KN539264.1_FGP002 15 KGPWTPEEDQKLLSYIEQHGHGCWRSLPT 43 79**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-13 | 7 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.631 | 10 | 60 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.33E-8 | 12 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-9 | 15 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.24E-7 | 17 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGRSPCCEKE AGLKKGPWTP EEDQKLLSYI EQHGHGCWRS LPTKAVQAVQ SSYGEACQEH 60 HFGGATAEAS FAGAGTLAGV LLDCSVTGAD QRFAARTEAC SGELQGEDDD DKGYWNSILN 120 MVNSSMSSSS SSLTSEVVTD TEMFLPATAA AAASATPVEF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539264.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006161 | 0.0 | AP006161.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1267B06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624862.1 | 5e-54 | transcription factor MYB106 | ||||
TrEMBL | A0A0E0CMG1 | 3e-53 | A0A0E0CMG1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G20550.1 | 2e-54 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-21 | myb domain protein 16 |