PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539262.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17635.4 Da PI: 8.1974 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.9 | 4.8e-12 | 2 | 31 | 13 | 42 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 f kR++ ++KKA+ELS+L +++++v+++++ KN539262.1_FGP005 2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31 89**************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.886 | 1 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-11 | 2 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-14 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.38E-15 | 2 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMVW PSVPEARRVI ERFRALPQKD 60 QYENTTDLEG FLKQRIANLQ EKVDKAKHEN DELETKLLLL NSLDGCLPSL VGLTVKQITS 120 LNSMVEERLK KLRGNGLLAT PVPTSNQDVA SATNIQD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539262.1_FGP005 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC093312 | 0.0 | AC093312.7 Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879443.1 | 1e-111 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D3FKL2 | 1e-110 | A0A0D3FKL2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NXE0 | 1e-111 | A0A0E0NXE0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G24400.1 | 1e-111 | (Oryza rufipogon) | ||||
STRING | OBART03G23720.1 | 1e-111 | (Oryza barthii) | ||||
STRING | OBART03G23730.1 | 1e-111 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27810.1 | 1e-17 | M-type_MADS family protein |